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All Tool catalog ( 99/99 )

Name (Link to site) | Link to commentary page Data type Biological species in the main concern Main Institutes of management
A Method for Extracting Optimal Sequence Related to Biological Activity | Commentary page DNA-motif All species NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
ADMER2 | Commentary page Chemical compound *AMEDAS data of intended year (used to create weather data) *Discharge data of intended chemical substance (used to create grid discharge data) All species "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
ADMER3 | Commentary page Emission of PRTR(Pollutant Release and Transfer Register) | chemical substances All species "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
AIST-ICET | Commentary page chemicals substances - "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
AIST-MeRAM | Commentary page chemicals substances All species "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
AIST-SHANEL | Commentary page - - "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
AIST‐CBAM | Commentary page chemicals substances fish "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
ALN | Commentary page "DNA, amino acid sequences" All species "Graduate School of Informatics, Kyoto University"
ALNGG | Commentary page "DNA-sequence , Genome" Vertebrate "Graduate School of Informatics, Kyoto University"
ASIAN | Commentary page Gene expression profile All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
BioDBScan | Commentary page "genes, pathways, diseases, etc." "Homo sapiens, Mus musculus, Rattus norvegicus, Ciona intestinalis" "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Blast wind overpressure and impulse calculation | Commentary page "Dosage, Distance" None "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
CADLIVE | Commentary page Metabolite repression All species Kyushu Insistute of Technology
CARCINOscreen | Commentary page Chemical compound Rat "Chemicals Evaluation and Research Institute, Japan (CERI)"
COSMOS | Commentary page DNA-sequnece All species "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
CentroidAlifold | Commentary page RNA secondary structure All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
CentroidAlign | Commentary page RNA alignment All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
CentroidFold | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
CentroidHomfold | Commentary page secondary structure All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
ChIP2LAMP | Commentary page "ChIP-sequence, RNA-sequence" All species "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
CoCoozo | Commentary page Ptotein-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
DAFS | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
DPClus | Commentary page Protein-function All species NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Data mining analysis of supersecondary structure | Commentary page Protein structure None "Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)"
Dnemulator | Commentary page DNA-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Dr DMASS | Commentary page mass spectral data All species NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
Dr DMASS+ | Commentary page mass spectral data All species NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
FORTE | Commentary page Protein-structure All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Fdur | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
FragmentAlign | Commentary page "Metabolite repression , mass spectra" All species Kazusa DNA Research Institute (KDRI)
GPCRs Interaction Partners | Commentary page Interaction GPCR All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
GRIFFIN | Commentary page "Ptotein-sequence , amino acid sequence" All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
GRisk | Commentary page Under investigation All species "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
GUPPY | Commentary page DNA-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
GeneDecoder | Commentary page "DNA-sequence , Eukaryote gene" Eukaryote "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
HEAT | Commentary page Annotation Human "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
HapRisk | Commentary page Under investigation All species "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
HomeoRoq | Commentary page protein - amino-acid sequence All species "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Hyperlink Management System | Commentary page Data identifiers (IDs) HumanMus musculus | Rattus norvegicus | Cinoa intestinails "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
ID Converter System | Commentary page Data identifiers (IDs) Human "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
ID Resolver | Commentary page ID identifiers "Human, mouse and chemical compounds data " "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
IPknot | Commentary page RNA pseudoknot All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Idiographica | Commentary page Chromosome "Human, Mouse, Rat, Fruit fly" "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
KAGIANA | Commentary page Gene expression Arabidopsis Kazusa DNA Research Institute (KDRI)
KaPPA-View | Commentary page Metabolite repression Gene expression "Arabidopsis,Rice ,Tomato ,Lotus japonicus" Kazusa DNA Research Institute (KDRI)
KaPPA-View4 KEGG | Commentary page Metabolite repression Pathway All species Kazusa DNA Research Institute (KDRI)
LAMP | Commentary page p-values of multiple testing correltions All species "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
LAMPLINK | Commentary page DNA-sequnece All species "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
LAST | Commentary page "DNA-sequence ,RNA, protein, user-defined alphabet." All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
MAFFT | Commentary page DNA-sequence alignment All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
MDV | Commentary page DNA-motif "Human, mouse promoters are available on the site." "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
MXSCARNA | Commentary page RNA (RNA sequence) All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
MitoFates | Commentary page protein - amino-acid sequence "fungi, plant, metazoa" "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Murlet | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
NGSFeatGen | Commentary page DNA-sequence NGS All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
PAPIA | Commentary page Protein-structure All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
PHMMTS | Commentary page RNA All species "Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
PMID-Extractor | Commentary page Journal None "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
POODLE | Commentary page Protein-AminoAcid All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
PRRN | Commentary page "DNA, amino acid sequences" All species "Graduate School of Informatics, Kyoto University"
PSTAG | Commentary page RNA All species "Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
PowerFT | Commentary page mass spectrome data All species Kazusa DNA Research Institute (KDRI)
Prediction program | Commentary page DNA-sequence Yeast Hiroshima University
PubMedScan | Commentary page Articles registered in PubMed None "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
RNAmine | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Mizuho Information and Research Institute, Inc."
Raccess | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
RactIP | Commentary page RNA RNA-RNA interaction All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Rchange | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Recount | Commentary page DNA-sequence  Next Generation Sequencing Data All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Rentropy | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Rfold | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Risk Learning | Commentary page Chemical compound human "Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)"
SAMURAI | Commentary page Gene expression All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
SCARNA Local Multiple | Commentary page RNA alignment All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
SGCAL | Commentary page Sugar chain All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
SMARTS 3D | Commentary page Protein structure None "Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)"
SNP-system | Commentary page DNA-sequence All species "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
SOKOS/CAN | Commentary page "RNA , RNA sequence" All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
SPALN | Commentary page Comparative genomics All species "Graduate School of Informatics, Kyoto University"
Scarna | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
ScreenCap3 | Commentary page protein - amino-acid sequence metazoa "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
SlideSort | Commentary page DNA-sequence  Protein-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
SokanProject | Commentary page Gene expression All species Kazusa DNA Research Institute (KDRI)
SpiceHIT | Commentary page Metabolite repression All species Kazusa DNA Research Institute (KDRI)
Stem Kernels | Commentary page RNA All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
TACT | Commentary page DNA-sequence Humannon-human 41 species (http://h-invitational.jp/tact/species.html) "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
THE MICROARRAY ANALYSIS SYSTEM - TREBAX - | Commentary page Gene expression Microarray data All species NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)
TMBETA-NET | Commentary page Protein-motif All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Web page checker | Commentary page Web contents None "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
WoLF PSORT | Commentary page "DNA-sequence , Nuclear genome encoded, Eukaryotic proteins" Eukaryotes "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Workflow | Commentary page workflow All species "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
fastapl | Commentary page DNA-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
miRRim | Commentary page RNA  (miRNA) All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
myPresto | Commentary page Protein-structure All species "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
paraclu | Commentary page DNA-sequence All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
seg-suite | Commentary page "DNA-sequence , RNA-sequence" All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
siExplorer | Commentary page RNA siRNA Under investigation "Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo"
tantan | Commentary page "DNA-sequence , RNA, Aminoacid" All species "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"