MEDALS METI Life science integrated database portal site

Home
tool

All tool catalog

101/101

A Method for Extracting Optimal Sequence Related to Biological Activity

Data type: DNA-motif

Main Institutes of management: NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)

Biological species in the main concern: All species

Commentary page →

ADMER2

Data type: Chemical compound *AMEDAS data of intended year (used to create weather data) *Discharge data of intended chemical substance (used to create grid discharge data)

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

ADMER3

Data type: Emission of ＰＲＴＲ（Pollutant Release and Transfer Register) | chemical substances

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

AIST-ICET

Data type: chemicals substances

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: -

Commentary page →

AIST-MeRAM

Data type: chemicals substances

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

AIST-SHANEL

Data type: -

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: -

Commentary page →

AIST‐CBAM

Data type: chemicals substances

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: fish

Commentary page →

ALN

Data type: DNA, amino acid sequences

Main Institutes of management: Graduate School of Informatics, Kyoto University

Biological species in the main concern: All species

Commentary page →

ALNGG

Data type: DNA-sequence , Genome

Main Institutes of management: Graduate School of Informatics, Kyoto University

Biological species in the main concern: Vertebrate

Commentary page →

ASIAN

Data type: Gene expression profile

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

BioDBScan

Data type: genes, pathways, diseases, etc.

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Homo sapiens, Mus musculus, Rattus norvegicus, Ciona intestinalis

Commentary page →

Blast wind overpressure and impulse calculation

Data type: Dosage, Distance

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

CADLIVE

Data type: Metabolite repression

Main Institutes of management: Kyushu Insistute of Technology

Biological species in the main concern: All species

Commentary page →

CARCINOscreen

Data type: Chemical compound

Main Institutes of management: Chemicals Evaluation and Research Institute, Japan (CERI)

Biological species in the main concern: Rat

Commentary page →

COSMOS

Data type: DNA-sequnece

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

CentroidAlifold

Data type: RNA secondary structure

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

CentroidAlign

Data type: RNA alignment

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

CentroidFold

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

CentroidHomfold

Data type: secondary structure

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

ChIP2LAMP

Data type: ChIP-sequence, RNA-sequence

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

CoCoozo

Data type: Ptotein-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

DAFS

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

DPClus

Data type: Protein-function

Main Institutes of management: NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)

Biological species in the main concern: All species

Commentary page →

Data mining analysis of supersecondary structure

Data type: Protein structure

Main Institutes of management: Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

Dnemulator

Data type: DNA-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Dr DMASS

Data type: mass spectral data

Main Institutes of management: NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)

Biological species in the main concern: All species

Commentary page →

Dr DMASS+

Data type: mass spectral data

Main Institutes of management: NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)

Biological species in the main concern: All species

Commentary page →

FORTE

Data type: Protein-structure

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Fdur

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

FragmentAlign

Data type: Metabolite repression , mass spectra

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: All species

Commentary page →

GPCRs Interaction Partners

Data type: Interaction GPCR

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

GRIFFIN

Data type: Ptotein-sequence , amino acid sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

GRisk

Data type: Disease risk

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

GUPPY

Data type: DNA-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

GeneDecoder

Data type: DNA-sequence , Eukaryote gene

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Eukaryote

Commentary page →

HEAT

Data type: Annotation

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human

Commentary page →

HESS

Data type: Chemical compound toxicity knowledge

Main Institutes of management: National Institute of Technology and Evaluation (NITE)

Biological species in the main concern: Rat

Commentary page →

HapRisk

Data type: Expression risk

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

HomeoRoq

Data type: protein - amino-acid sequence

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Hyperlink Management System

Data type: Data identifiers (IDs)

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: HumanMus musculus | Rattus norvegicus | Cinoa intestinails

Commentary page →

ID Converter System

Data type: Data identifiers (IDs)

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human

Commentary page →

ID Resolver

Data type: ID identifiers

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human, mouse and chemical compounds data

Commentary page →

IPknot

Data type: RNA pseudoknot

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Idiographica

Data type: Chromosome

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human, Mouse, Rat, Fruit fly

Commentary page →

KAGIANA

Data type: Gene expression

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: Arabidopsis

Commentary page →

KaPPA-View

Data type: Metabolite repression Gene expression

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: Arabidopsis,Rice ,Tomato ,Lotus japonicus

Commentary page →

KaPPA-View4 KEGG

Data type: Metabolite repression Pathway

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: All species

Commentary page →

LAMP

Data type: p-values of multiple testing correltions

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

LAMPLINK

Data type: DNA-sequnece

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

LAST

Data type: DNA-sequence ,RNA, protein, user-defined alphabet.

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

MAFFT

Data type: DNA-sequence alignment

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

MDV

Data type: DNA-motif

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human, mouse promoters are available on the site.

Commentary page →

MXSCARNA

Data type: RNA (RNA sequence)

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

MitoFates

Data type: protein - amino-acid sequence

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: fungi, plant, metazoa

Commentary page →

Murlet

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

NGSFeatGen

Data type: DNA-sequence NGS

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

PAPIA

Data type: Protein-structure

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

PHMMTS

Data type: RNA

Main Institutes of management: Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

PMID-Extractor

Data type: Journal

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

POODLE

Data type: Protein-AminoAcid

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

PRRN

Data type: DNA, amino acid sequences

Main Institutes of management: Graduate School of Informatics, Kyoto University

Biological species in the main concern: All species

Commentary page →

PSTAG

Data type: RNA

Main Institutes of management: Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

PowerFT

Data type: mass spectrome data

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: All species

Commentary page →

Prediction program

Data type: DNA-sequence

Main Institutes of management: Hiroshima University

Biological species in the main concern: Yeast

Commentary page →

PubMedScan

Data type: Articles registered in PubMed

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

RNAmine

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) | Mizuho Information and Research Institute, Inc.

Biological species in the main concern: All species

Commentary page →

Raccess

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

RactIP

Data type: RNA RNA-RNA interaction

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Rchange

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Recount

Data type: DNA-sequence 　Next Generation Sequencing Data

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Rentropy

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Rfold

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Risk Learning

Data type: Chemical compound

Main Institutes of management: Research Institute of Science for Safety and Sustainability (RISS), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: human

Commentary page →

SAMURAI

Data type: Gene expression

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SCARNA Local Multiple

Data type: RNA alignment

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SGCAL

Data type: Sugar chain

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SMARTS 3D

Data type: Protein structure

Main Institutes of management: Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

SNP-system

Data type: DNA-sequence

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SOKOS/CAN

Data type: RNA , RNA sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SPALN

Data type: Comparative genomics

Main Institutes of management: Graduate School of Informatics, Kyoto University

Biological species in the main concern: All species

Commentary page →

Scarna

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

ScreenCap3

Data type: protein - amino-acid sequence

Main Institutes of management: Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: metazoa

Commentary page →

SlideSort

Data type: DNA-sequence 　Protein-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

SokanProject

Data type: Gene expression

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: All species

Commentary page →

SpiceHIT

Data type: Metabolite repression

Main Institutes of management: Kazusa DNA Research Institute (KDRI)

Biological species in the main concern: All species

Commentary page →

Stem Kernels

Data type: RNA

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

TACT

Data type: DNA-sequence

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Humannon-human 41 species (http://h-invitational.jp/tact/species.html)

Commentary page →

THE MICROARRAY ANALYSIS SYSTEM - TREBAX -

Data type: Gene expression Microarray data

Main Institutes of management: NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST)

Biological species in the main concern: All species

Commentary page →

TMBETA-NET

Data type: Protein-motif

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

Web page checker

Data type: Web contents

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: None

Commentary page →

WoLF PSORT

Data type: DNA-sequence , Nuclear genome encoded, Eukaryotic proteins

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Eukaryotes

Commentary page →

Workflow

Data type: workflow

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

fastapl

Data type: DNA-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

miRRim

Data type: RNA 　(miRNA)

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

myPresto

Data type: Protein-structure

Main Institutes of management: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

paraclu

Data type: DNA-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

seg-suite

Data type: DNA-sequence , RNA-sequence

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

siExplorer

Data type: RNA siRNA

Main Institutes of management: Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo

Biological species in the main concern: Human

Commentary page →

tantan

Data type: DNA-sequence ,　RNA, Aminoacid

Main Institutes of management: Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: All species

Commentary page →

toxRank

Data type: -

Main Institutes of management: National Institute of Advanced Industrial Science and Technology (AIST)

Biological species in the main concern: Human|RAT

Commentary page →

101/101