Name | Rchange |
Aliases | None |
Description | Rchange compute energy changes of RNA secondary structures in response to base mutations(cited from original site). |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | http://rtools.cbrc.jp/ |
Interface | CUI |
Input | Nucleic acid sequence(FASTA format) |
Output | Energy change of secondary structure(Text、PDF,PNG,EPS) |
Input example | run_rchange -outfile=rchange_out.txt -command=compute_mut1 -seqfile=seqs.fa -max_span=200 -max_mut2_span=10 : You can get I/O files in the downloaded file. |
Keyword | Algorithms|computing energy changes|RNA secondary structures|base mutations. |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | None |
External resources (databases) in building the product. | None |
Data type | RNA |
Biological species in the main concern | All species |
Conditions of use | None |
Frequency of updates (in last two years) | 0time/year |
Last date of updates (date of confirmation) | 2011/00/00 (2019/07/09) |
Main IDs used in the products | N/A |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | N/A |
Published papers (PubMed IDs) | pmid:22373787 |
Operational Status | Available |