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Database catalog

DNA, Genome ( 35 )
ARCHAIC
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Summary | "The database provides DNA sequences of archaebacterial genomes and their annotation. The aim of ARCHAIC is to analyze archaebacterial genomic DNA sequences (including originally determined ones) in order to understand the overall organization of the genomes and compare different species. Original informatical methods were developed for identifying genes, pseudo-genes, and operons essentially on the basis of a statistical analysis of transcription and translation signals. Three archaes data are available (Pyrococcus sp. OT3, Thermoplasma volcanium GSS1, Archaeoglobus fulgidus)." |
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Data type | "DNA-sequence , genome" |
ASTRA
Acacia EST database
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Summary | "The database contains 6253 EST sequences of Acacia, an economic plant. The database has BLAST search function." |
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Data type | DNA-sequence EST |
CGH Data Base
DOGAN
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Summary | "You can get the results of microbial sequence data, gene information (ORF), gene map, motifs, paper as the basis of estimated genes and proteome analysis from DOGAN. This information has been published to confirm the annotater, re-annotation is also in line with the passage of time. In addition, Blast homology search using the service and, DNA cloning service orders." |
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Data type | "DNA-sequence , Proteome" |
Database for genetic engineering of microalgae
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Summary | "Useful information for genetic engineering of microalgae is collected in the database.The information is categorized as follows;1. host - vector (structure of vector, promoter, research institute, papers)2. gene transfer technique (organism, method, papers)3. production of useful materials (product, host, transferred genes, papers)4. inhibitor tolerant mutants (organism, inhibitor, mutant gene, papers)5. synthetic transposon6. selective marker(from original site)" |
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Data type | DNA-regration-region |
Database of genomes and transcriptional regulations for filamentous fungi
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Summary | "The filamentous fungus, Aspergillus oryzae, plays an important role in the Japanese sake and fermentation industry, and many industrial enzymes are produced by this organism. We hope this database will provide you useful information for your research and industrial applications." |
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Data type | DNA-sequence |
Distribution of Human cDNA Clones
DoBISCUIT
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Summary | "Secondary metabolites such as those produced by bacteria have pharmacologically important activities and attract attentions as lead-compounds and/or candidates for drug development.Although we can find many INSDC entries describing either complete or partial sequences of such secondary metabolite biosynthetic gene clusters, gene descriptions in each entry varies wildly.DoBISCUIT enables easy access to comprehensive information related to biosynthesis clusters and browsing standardized up-to-date gene descriptions. DoBISCUIT will thus serve as a useful reference for the analysis of secondary metabolite synthesis." |
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Data type | "Annotation , secondary metabolite" |
Evola
FLJ Human cDNA Database
FuLoJa
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Summary | FuLoJa include the lotus japonicus full-length cDNA sequences analysed with InterPro(cited from original site). |
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Data type | DNA-motif |
G-compass
GGDB
GenoBase
H-InvDB
HGPD
Human-Gene diversity Of Life-style related Diseases (H-GOLD)
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Summary | "Genetic polymorphism information relating to model diseases. This site provides two databases and seven (downloadable) analysis tools. At 22th Jun 2012, The archive of GDBS data set opened in LSDB Archive. " |
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Data type | ", microsatellites, SNP" |
Integrated Cancer Genome Database
JSNP DATABASE
LEGENDA
MCG CNV Database
MiFuP
MiFuP Safety
Microorganism database system
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Summary | This database allows users to search microorganisms and to see the various biological information. This database is available only in Japanese. |
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Data type | "Journal old species name (if any), philogenetic position, type strain, isolation origin, chemical components as chemical taxonomic index, substrate availability, energy gain type, accession number of 16S rDNA to DDBJ/EMBL/GenBank and so on." |
NBRC culture catalogue search
PMPj-Blast
RAvariome
SAHG
SEVENS
TOT-DB
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Summary | TOT-DB (The Theileria orientalis Genome Annotation Database) ia a database of the genome information of parasitic protists Theileria orientalis.Genes annotated by an integration of expression data and gene prediction by several software are displayed on the G-integra genome browser.TOT-DB also offers the BLAST homolgy search service and data downloads of the genome sequences and gene annotation of T. orientalis. |
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Data type | Comparative genomics |
The database of full-length cDNA and EST sequences of Lotus
TraP
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Summary | "The metabolic pathways were compared, such as glycolysis, the TCA cycle, amino acid biosynthesis, and nucleic acid biosynthesis among 7 archaea. It is possible to highlight the differences between different archaea. (cited from the original site)" |
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Data type | Metabolite repression |
UCSC GenomeBrowser for Functional RNA
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Summary | UCSC GenomeBrowser for Functional RNA is a UCSC Genome Browser mirror with large additional custom tracks specifically associated with non-coding elements. It also includes several functional enhancements such as a presentation of a common secondary structure prediction at any given genomic window <500 bp. |
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Data type | Comparative genomics |