Database

UCSC GenomeBrowser for Functional RNA

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NameUCSC GenomeBrowser for Functional RNA
AliasesNone
DescriptionUCSC GenomeBrowser for Functional RNA is a UCSC Genome Browser mirror with large additional custom tracks specifically associated with non-coding elements. It also includes several functional enhancements such as a presentation of a common secondary structure prediction at any given genomic window <500 bp.
TypeDB
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input exampleUnknown
KeywordAspergillus oryzae | Saccharomyces cerevisiae
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.Many
Data typeComparative genomics
Biological species in the main concern"Homo sapiens | Rattus norvegicus | Drosophila melanogaster | Aspergillus oryzae [Taxonomy_id: 5062] | Bombyx mori [Taxonomy_id: 7091, domestic silkworm] | Caenorhabditis elegans [Taxonomy_id: 6239] | Ciona intestinalis [Taxonomy_id: 7719, vase tunicate] | Drosophila melanogaster [Taxonomy_id: 7227, fruit fly] | Homo sapiens [Taxonomy_id: 9606, human] | Rattus norvegicus [Taxonomy_id: 10116, Norway rat] | Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast]"
Conditions of useAttribution&Share Alike
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)2015/08/20 (2019/07/02)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:18948287
Operational StatusClosed