Name UCSC GenomeBrowser for Functional RNA
Aliases None

UCSC GenomeBrowser for Functional RNA is a UCSC Genome Browser mirror with large additional custom tracks specifically associated with non-coding elements. It also includes several functional enhancements such as a presentation of a common secondary structure prediction at any given genomic window <500 bp.

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) "
Country of the Institute Japan
URL of the site -
Interface GUI
Input example

Under investigation

Under investigation
Amount of the all data for download(Mbyte) | Method to obtain the all data. 4096.0|unknown
External resources (databases) in building the product. Many
Data type Comparative genomics
Biological species in the main concern
"Homo sapiens | Rattus norvegicus | Drosophila melanogaster | ... More
  • Aspergillus oryzae [Taxonomy_id: 5062]
  • Bombyx mori [Taxonomy_id: 7091, domestic silkworm]
  • Caenorhabditis elegans [Taxonomy_id: 6239]
  • Ciona intestinalis [Taxonomy_id: 7719, vase tunicate]
  • Drosophila melanogaster [Taxonomy_id: 7227, fruit fly]
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
  • Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast]
Conditions of use Attribution&Share Alike
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 2009/02/01 (2012/07/06)
Main IDs used in the products -
How to make a link to get access to each IDs. None
external databases to which this database/tool have links


Published papers (PubMed IDs)