Name H-InvDB
Aliases H-Invitational database
Description

"H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, protein functions, etc."

Type DB
Main Institutes of management "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/hinv/ahg-db/index.jsp
Interface GUI | FTP | SOAP web service | REST web service
Input example

Enter the keyword "protein" in the text box on the upper right of the top page and click "GO" button.

Keyword
cDNA | annotation | integration
Amount of the all data for download(Mbyte) | Method to obtain the all data. 2628.656|Download from the following sites FTP:ftp://ftp.ddbj.nig.ac.jp/mirror_database/hinv/ or HTTP:http://www.h-invitational.jp/hinv/dataset/download_jp.cgi
External resources (databases) in building the product. CHGC | DKFZ/MIPS | IMSUT | KDRI | MGC/NCI | BIND | BodyMap | CCDS | dbSNP | DDBJ/EMBL/GenBank | DIP | Ensembl | EntrezGene | fRNAdb | GenAtlas | Gene ontology (GO) | GeneCards | GGDB | GTOP | HGNC | H-GOLD (GDBS) | HPRD | IntAct | InterPro | KEGG | LIFEdb | LSBM | MGI | MINT | Mutation view | NC-IUBMB (EC) | OMIM | PubMed | RefSeq | UCSC | UniGene | UniProt
Data type "RNA human full-length cDNA, mRNA"
Biological species in the main concern
"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of use Attribution&Share AlikeUser account is not required.
Frequency of updates (in last two years) 6
Last date of updates (date of confirmation) 2013/07/29 (2013/07/30)
Main IDs used in the products H-Inv cluster ID (HIX) | H-Inv transcript ID (HIT) | H-Inv protein ID (HIP) | H-Inv family ID (HIF)
How to make a link to get access to each IDs. http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=[HIX]
external databases to which this database/tool have links

CHGC (http://www.chgc.sh.cn/en/) | DKFZ/MIPS (http://www.dkfz.de/) | IMSUT (http://www.ims.u-tokyo.ac.jp/imsut/en/) | KDRI (http://www.kazusa.or.jp/e/) | MGC/NCI (http://mgc.nci.nih.gov/) | BIND (http://bond.unleashedinformatics.com/) | BodyMap (http://bodymap.ims.u-tokyo.ac.jp/) | CCDS (http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=CCDS4091) | dbSNP (http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?searchType=adhoc_search&type=rs&rs=rs35752268) | DDBJ (http://getentry.ddbj.nig.ac.jp/search/get_entry?accnumber=BC053657) | DIP (http://dip.doe-mbi.ucla.edu) | Ensembl (http://uswest.ensembl.org/Homo_sapiens/Transcript/Summary?g=ENSG00000113532;r=5:100145357-100238970;t=ENST00000231461) | EntrezGene (http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=7903) | fRNAdb (http://togodb.biosciencedbc.jp/togodb/view/frnadb_summary) | GenAtlas | Gene ontology (GO) (http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0008373) | GeneCards (http://www.genecards.org/cgi-bin/carddisp.pl?gene=ST8SIA4) | GGDB (http://riodb.ibase.aist.go.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=ST8SIA4) | GTOP (http://sybock.genes.nig.ac.jp/~hinv7/cgi-bin/mas.pl.cgi?org=hinv7&id=HIT000044689) | HGNC (http://www.genenames.org/data/hgnc_data.php?match=ST8SIA4) | H-GOLD (GDBS) (http://hinv.jp/gdbs/viewer/Viewer?ch=5&fr=100145359&to=100238970&gv=new&md=1) | HGPD (http://riodb.ibase.aist.go.jp/hgpd/cgi-bin/pg_locus_list.cgi?txt_srch_cdna_name=FLJ82330) | HPRD (http://www.hprd.org/) | IntAct (http://www.ebi.ac.uk/intact/main.xhtml) | InterPro (http://www.ebi.ac.uk/interpro/IEntry?ac=IPR012163) | KEGG (http://www.genome.jp/dbget-bin/www_bget?hsa+7903) | LIFEdb (http://www.lifedb.de/lifedb/) | MGI (http://www.informatics.jax.org/searchtool/Search.do?query=mgi:106018) | MINT (http://mint.bio.uniroma2.it/mint/Welcome.do) | Mutation view (http://mutview.dmb.med.keio.ac.jp/MutationView/jsp/mutview/java/geneWin.jsp?omimId=) | NC-IUBMB (EC) | OMIM (http://omim.org/entry/601888) | PubMed (http://www.ncbi.nlm.nih.gov/pubmed/7624364?dopt=Abstract) | RefSeq (http://www.ncbi.nlm.nih.gov/nucleotide/NM_175052) | UCSC (http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human&position=chr5:100142639-100238987&db=) | UniGene (http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene) | UniProt (http://www.uniprot.org/uniprot/Q92187)

Published papers (PubMed IDs)

pmid:23245335 | pmid:23197657 | pmid:19933760 | pmid:18089548 | pmid:15103394