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TACT
| Name | TACT |
|---|---|
| Aliases | Transcriptome Auto-annotation Conducting Tool |
| Description | Transcriptome Auto-annotation Conducting Tool (TACT) is a web-based automated prediction tool of functional annotation that was developed by integrating ORF prediction, similarity search (BLASTX and FASTY) and motif prediction (InterProScan). TACT was produced in collaboration with the H-Invitational project, and has contributed to the development of the H-Invitational Database (H-InvDB). |
| Type | Tool |
| Main Institutes of management | Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | - |
| Interface | GUI |
| Input | |
| Output | |
| Input example | At the top page, enter the query nucleotide sequences or DDBJ accession number and click on "Submit". |
| Keyword | Gene |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0.0|None |
| External resources (databases) in building the product. | DDBJ/EMBL/GenBank | Ensembl | Gene ontology (GO) | H-InvDB | InterPro | RefSeq | UCSC | UniProt |
| Data type | DNA-sequence |
| Biological species in the main concern | Humannon-human 41 species (http://h-invitational.jp/tact/species.html) |
| Conditions of use | Attribution&No Derivative WorksUser account is １not required. |
| Frequency of updates (in last two years) | 9 |
| Last date of updates (date of confirmation) | 2008/03/03 (2019/07/05) |
| Main IDs used in the products | Transcript ID (DDBJ accession for H-InvDB transcripts) |
| How to make a link to get access to each IDs. | http://h-invitational.jp/tact/cgi-bin/tact.cgi?acc=[DDBJ accession] |
| external databases to which this database/tool have links | H-InvDB(http://www.h-invitational.jp/) |
| Published papers (PubMed IDs) | pmid:16845023 |
| Operational Status | Closed |
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