| Name | GenoBase |
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| Aliases | GenoBase |
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| Description | Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained. |
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| Type | DB |
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| Main Institutes of management | NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST) | PURDUE UNIVERSITY |
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| Country of the Institute | Japan |
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| URL of the site | https://dbarchive.biosciencedbc.jp/jp/genobase-v6/desc.html |
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| Interface | GUI |
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| Input example | [by keyword]Enter a word for JW no, ECK no, gene id, gene name or biological keywords, then push "Search" button.[by homology]Input DNA Sequence or Amino acid sequence and select homology search program, then push "Search" button.[CategoricalSearch]Select DNA SIZE(bp), Genomic region(bp) or Genomic region(min) for ORF, RNA or Transcription. Then input genome position and push "Search" button.[clip sequence]Input Start/End position (1 .. 4646332 ) or input DNA sequence in the text area. Then push Convert (Clip/Convert) button. |
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| Keyword | Escherichia coli K-12 (W3110) | Escherichia coli K-12 (MG1655) |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 20 (Genome data)|NA |
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| External resources (databases) in building the product. | None |
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| Data type | Annotation |
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| Biological species in the main concern | Escherichia coli str. K-12 substr. MG1655 [Taxonomy_id: 511145] | Escherichia coli str. K-12 substr. W3110 [Taxonomy_id: 316407] |
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| Conditions of use | CC BY-SA 2.1 JP |
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| Frequency of updates (in last two years) | 1 time/year |
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| Last date of updates (date of confirmation) | 2009/01/00 (2019/07/02) |
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| Main IDs used in the products | JW | ECK |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | pmid:16738554 |
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| Operational Status | Archived |
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