Database

GenoBase

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NameGenoBase
AliasesGenoBase
Description"Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained."
TypeDB
Main Institutes of managementNARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST) | PURDUE UNIVERSITY
Country of the InstituteJapan
URL of the sitehttps://dbarchive.biosciencedbc.jp/jp/genobase-v6/desc.html
InterfaceGUI
Input example"[by keyword]Enter a word for JW no, ECK no, gene id, gene name or biological keywords, then push "Search" button.[by homology]Input DNA Sequence or Amino acid sequence and select homology search program, then push "Search" button.[CategoricalSearch]Select DNA SIZE(bp), Genomic region(bp) or Genomic region(min) for ORF, RNA or Transcription. Then input genome position and push "Search" button.[clip sequence]Input Start/End position (1 .. 4646332 ) or input DNA sequence in the text area. Then push Convert (Clip/Convert) button."
KeywordEscherichia coli K-12 (W3110) | Escherichia coli K-12 (MG1655)
Amount of the all data for download(Mbyte) | Method to obtain the all data.20 (Genome data)|NA
External resources (databases) in building the product.None
Data typeAnnotation
Biological species in the main concernEscherichia coli str. K-12 substr. MG1655 [Taxonomy_id: 511145] | Escherichia coli str. K-12 substr. W3110 [Taxonomy_id: 316407]
Conditions of useCC BY-SA 2.1 JP
Frequency of updates (in last two years)1 time/year
Last date of updates (date of confirmation)2009/01/00 (2019/07/02)
Main IDs used in the productsJW | ECK
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:16738554
Operational StatusArchived