Name GenoBase
Aliases GenoBase
Description

"Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained."

Type DB
Main Institutes of management NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST) | PURDUE UNIVERSITY
Country of the Institute Japan
URL of the site https://dbarchive.biosciencedbc.jp/jp/genobase-v6/desc.html
Interface GUI
Input example

"[by keyword]Enter a word for JW no, ECK no, gene id, gene name or biological keywords, then push "Search" button.[by homology]Input DNA Sequence or Amino acid sequence and select homology search program, then push "Search" button.[CategoricalSearch]Select DNA SIZE(bp), Genomic region(bp) or Genomic region(min) for ORF, RNA or Transcription. Then input genome position and push "Search" button.[clip sequence]Input Start/End position (1 .. 4646332 ) or input DNA sequence in the text area. Then push Convert (Clip/Convert) button."

Keyword
Escherichia coli K-12 (W3110) | Escherichia coli K-12 (MG1655)
Amount of the all data for download(Mbyte) | Method to obtain the all data. 20 (Genome data)|NA
External resources (databases) in building the product. None
Data type Annotation
Biological species in the main concern
Escherichia coli str. K-12 substr. MG1655 [Taxonomy_id: 511145] | Escherichia coli str. K-12 substr. W3110 [Taxonomy_id: 316407]
Conditions of use CC BY-SA 2.1 JP
Frequency of updates (in last two years) 1 time/year
Last date of updates (date of confirmation) 2009/01/00 (2019/07/02)
Main IDs used in the products JW | ECK
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

pmid:16738554

Operational Status

Archived