Name DOGAN
Aliases Database of Genome Analyzed at NITE
Description

"You can get the results of microbial sequence data, gene information (ORF), gene map, motifs, paper as the basis of estimated genes and proteome analysis from DOGAN. This information has been published to confirm the annotater, re-annotation is also in line with the passage of time. In addition, Blast homology search using the service and, DNA cloning service orders."

Type DB
Main Institutes of management National Institute of Technology and Evaluation (NITE)
Country of the Institute Japan
URL of the site -
Interface GUI
Input example

Push "GO" button after input "kinase" in the text box of "Full text search".

Keyword
"Aeropyrum pernix K1 (hyperthermophilic archaeon) | Sulfolobus tokodaii strain 7 (hyperthermophilic archaeon) | Methanocella paludicola SANAE (methane-producing archeon) | ... More
  • Aeropyrum pernix K1 (hyperthermophilic archaeon)
  • Sulfolobus tokodaii strain 7 (hyperthermophilic archaeon)
  • Methanocella paludicola SANAE (methane-producing archeon)
  • Pyrococcus horikoshii OT3 (hyperthermophilic archaeon)
  • Corynebacterium efficiens YS-314 (glutamic acid-producing bacterium)
  • Arthrospira platensis NIES-39 (spirulina)
  • Acetobacter pasteurianus IFO 3283-32 (acetic bacterium)
  • Tetragenococcus halophilus NBRC 12172 (halotolerant lactic acid bacterium)
"
Amount of the all data for download(Mbyte) | Method to obtain the all data. 87|http://www.bio.nite.go.jp/dogan/DataDownload
External resources (databases) in building the product. PubMed | UniProt | InterPro | KEGG
Data type "DNA-sequence , Proteome"
Biological species in the main concern
"Acetobacter pasteurianus IFO 3283-32 | Acidiphilium multivorum AIU301 | Aeropyrum pernix K1 | ... More
  • Acetobacter pasteurianus IFO 3283-32 [Taxonomy_id: 634457]
  • Acidiphilium multivorum AIU301 [Taxonomy_id: 926570]
  • Aeropyrum pernix K1 [Taxonomy_id: 272557]
  • Anaerolinea thermophila UNI-1 [Taxonomy_id: 926569]
  • Arthrospira platensis NIES-39 [Taxonomy_id: 696747]
  • Aspergillus oryzae RIB40 [Taxonomy_id: 510516]
  • Brevibacillus brevis NBRC 100599 [Taxonomy_id: 358681]
  • Caldisericum exile AZM16c01 [Taxonomy_id: 511051]
  • Corynebacterium efficiens YS-314 [Taxonomy_id: 196164]
  • Deferribacter desulfuricans SSM1 [Taxonomy_id: 639282]
  • Desulfovibrio magneticus RS-1 [Taxonomy_id: 573370]
  • Gemmatimonas aurantiaca T-27 [Taxonomy_id: 379066]
  • Kitasatospora setae [Taxonomy_id: 2066]
  • Kocuria rhizophila DC2201 [Taxonomy_id: 378753]
  • Methanocella paludicola SANAE [Taxonomy_id: 304371]
  • Microlunatus phosphovorus NM-1 [Taxonomy_id: 1032480]
  • Oscillibacter valericigenes Sjm18-20 [Taxonomy_id: 693746]
  • Pyrococcus horikoshii OT3 [Taxonomy_id: 70601]
  • Rhodococcus erythropolis PR4 [Taxonomy_id: 234621]
  • Rhodococcus opacus B4 [Taxonomy_id: 632772]
  • Saccharomyces cerevisiae Kyokai no. 7 [Taxonomy_id: 721032, baker's yeast]
  • Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 [Taxonomy_id: 718274]
  • Sphingobium japonicum UT26S [Taxonomy_id: 452662]
  • Sphingobium sp. SYK-6 [Taxonomy_id: 627192]
  • Staphylococcus aureus subsp. aureus MW2 [Taxonomy_id: 196620]
  • Staphylococcus aureus subsp. aureus N315 [Taxonomy_id: 158879]
  • Staphylococcus haemolyticus JCSC1435 [Taxonomy_id: 279808]
  • Streptomyces avermitilis MA-4680 [Taxonomy_id: 227882]
  • Sulfolobus tokodaii str. 7 [Taxonomy_id: 273063]
  • Tetragenococcus halophilus NBRC 12172 [Taxonomy_id: 945021]
"
Conditions of use None
Frequency of updates (in last two years) 12
Last date of updates (date of confirmation) 2018/04/16 (2019/07/04)
Main IDs used in the products ORF_ID | NF_ID
How to make a link to get access to each IDs. http://www.bio.nite.go.jp/dogan/feature/view/[ORF_ID]
external databases to which this database/tool have links

"UniProt (http://www.uniprot.org/), HAMAP(http://www.expasy.org/sprot/hamap/), InterPro(http://www.ebi.ac.uk/interpro/), Pfam(http://pfam.sanger.ac.uk/), PROSITE(http://ca.expasy.org/prosite/), TIGRFAMs(http://www.jcvi.org/cms/research/projects/tigrfams/overview/), COG(http://www.ncbi.nlm.nih.gov/COG/), MEROPS(http://merops.sanger.ac.uk/), TCDB(http://www.tcdb.org/), KEGG(http://www.genome.jp/kegg/), DDBJ(http://www.ddbj.nig.ac.jp/), NCBI(http://www.ncbi.nlm.nih.gov/), EMBL(http://www.ebi.ac.uk/embl/), GOLD(http://www.genomesonline.org/), Genome project of Streptomyces avermitilis(http://avermitilis.ls.kitasato-u.ac.jp)"

Published papers (PubMed IDs)

None

Operational Status

Closed