Database

FLJ Human cDNA Database

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NameFLJ Human cDNA Database
AliasesNone
Description"FLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing.Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site) "
TypeDB
Main Institutes of management"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttp://flj.lifesciencedb.jp/
InterfaceGUI
Input example"Select a database at Top:Database, input the sequence ID "BRACE3039378" in "ID" text box, push "Submit" button."
KeywordHuman | full length cDNA | clone | transcription start site
Amount of the all data for download(Mbyte) | Method to obtain the all data.379|Download from the page http://flj.lifesciencedb.jp/top/sys_info/02_about_database/accession_no/accession_no_v031.htm
External resources (databases) in building the product.KIAA | MGC | DKFZ | RefSeq | Ensembl | UniGene | UCSC
Data typeDNA-sequence full length cDNA
Biological species in the main concern"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of useNone
Frequency of updates (in last two years)2
Last date of updates (date of confirmation)2012/03/07 (2019/07/03)
Main IDs used in the productsFLJ ID (NBRC) | Clone ID (NBRC)
How to make a link to get access to each IDs.http://flj.lifesciencedb.jp/v031/cgi/sv_cdna_info.cgi?cdna=C-[Clone ID]
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:20728443
Operational Statusavailable