Database

MCG CNV Database

noimage
NameMCG CNV Database
AliasesNone
Description"The MCG CNV Database provides copy number variant ( CNV ) and loss of heterozygosity ( LOH ) detected through microarray analyses in healthy Japanese by our in-house BAC-based arrays, so-called MCG arrays1), and SNP array ( illumina, HumanOmniExpress Beadchip ). The MCG CNV Database shows an incidence of CNV and LOH in the Japanese healthy population and can be of assistance to estimate a pathogenicity of CNV or LOH detected in subjects having possible involvement of cryptic genomic aberrations behind their pathogenesis.(cited from original site)"
TypeDB
Main Institutes of managementTokyo Medical and Dental University
Country of the InstituteJapan
URL of the sitehttp://www.cghtmd.jp/CNVDatabase/top!changeEngLocale
InterfaceGUI
Input exampleStep1.Push the "Data View" menu on the upper side of the top page.Step2.Click one point on clomosome map figures.
KeywordCNV|BAC|MCG|SNP|de novo|family|illumina
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.Genesymbol|Refseq|Database of Genomic Variants
Data typeDNA-polymol array
Biological species in the main concern"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of useNone
Frequency of updates (in last two years)1time/year
Last date of updates (date of confirmation)2013/03/00 (2019/07/03)
Main IDs used in the productsClone ID (original)
How to make a link to get access to each IDs.http://www.cghtmd.jp/CNVDatabase/cnv-chrom-map.action#[Clone ID]
external databases to which this database/tool have linksUCSC(http://genome.ucsc.edu/)|NCBI(http://www.ncbi.nlm.nih.gov/)|Database of Genomic Variants(http://projects.tcag.ca)
Published papers (PubMed IDs)pmid:15245590
Operational Statusavailable