Name RAvariome
Aliases Rheumatoid Arthritis variome
Description

"RAvariome is a human genetic variant database of autoimmune inflammatory disease Rheumatoid Arthritis (RA). RAvariome provides literature-curated data and ""HOT variants"", the significant and reproducible variants in different studies. Moreover, based on the confirmed associations, we developed genetic risk prediction tool that provides relative risk for RA to be usable for clinicians, researchers and the general public."

Type DB
Main Institutes of management "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/hinv/rav/
Interface GUI
Input example

"In the list of "HOT variants", Robustry confirmed RA susceptibility loci in different geographic populations are shown by default. To compare the results from different studies, just click a gene name, SNP id, or literature information."

Keyword
rheumatoid arthritis | genetic variant|literature-curated data
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0|Coming soon
External resources (databases) in building the product. PubMed | dbSNP
Data type Genetic/Genomic variants
Biological species in the main concern
"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of use Attribution&Share Alike
Frequency of updates (in last two years) 5
Last date of updates (date of confirmation) 2013/09/26 (2019/07/03)
Main IDs used in the products dbSNP rs# (GemDBJ) | PubMed ID
How to make a link to get access to each IDs. http://www.h-invitational.jp/hinv/rav/all.php?snp=[dbSNP rs#]
external databases to which this database/tool have links

PubMed | dbSNP

Published papers (PubMed IDs)

pmid:24158836

Operational Status

available