| Name | RAvariome |
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| Aliases | Rheumatoid Arthritis variome |
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| Description | RAvariome is a human genetic variant database of autoimmune inflammatory disease Rheumatoid Arthritis (RA). RAvariome provides literature-curated data and "HOT variants", the significant and reproducible variants in different studies. Moreover, based on the confirmed associations, we developed genetic risk prediction tool that provides relative risk for RA to be usable for clinicians, researchers and the general public. |
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| Type | DB |
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| Main Institutes of management | Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://www.h-invitational.jp/hinv/rav/ |
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| Interface | GUI |
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| Input example | In the list of "HOT variants", Robustry confirmed RA susceptibility loci in different geographic populations are shown by default. To compare the results from different studies, just click a gene name, SNP id, or literature information. |
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| Keyword | rheumatoid arthritis | genetic variant|literature-curated data |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|Coming soon |
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| External resources (databases) in building the product. | PubMed | dbSNP |
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| Data type | Genetic/Genomic variants |
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| Biological species in the main concern | Homo sapiens [Taxonomy_id: 9606, human] |
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| Conditions of use | Attribution&Share Alike |
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| Frequency of updates (in last two years) | 5 |
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| Last date of updates (date of confirmation) | 2013/09/26 (2019/07/03) |
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| Main IDs used in the products | dbSNP rs# (GemDBJ) | PubMed ID |
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| How to make a link to get access to each IDs. | http://www.h-invitational.jp/hinv/rav/all.php?snp=[dbSNP rs#] |
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| external databases to which this database/tool have links | PubMed | dbSNP |
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| Published papers (PubMed IDs) | pmid:24158836 |
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| Operational Status | available |
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