Name PCDq
Aliases Protein Complex Database with complex quality index
Description

"PCDq is a human protein complex database with quality check index (QCI), which describes evidence levels as subunits (protein members) of the protein complex. In total, 1,319 human protein complexes were firstly predicted by finding densely connected regions with cluster properties in the PPI network integrated from six PPI data (BIND, DIP, MINT, HPRD, IntAct, and GNP_Y2H). Then they were curated with the literature so that PCDq consists of both known and predicted complexes/subunits. The evidence level for each subunit were also annotated and summarized to a quality check index (QCI) for each protein complex. PCDq can also show the complicated PPI sub-networks in a simple, editable graphical view ""PPI-Map"". "

Type DB
Main Institutes of management "Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/hinv/pcdq/
Interface GUI
Input example

"At the left down side of the main panel, input UniProt ID P68034, for example, then click the "search" button."

Keyword
protein complex | protein-protein interaction | quality check index
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0|Not yet available (coming soon)
External resources (databases) in building the product. H-InvDB | UniProt | RefSeq | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed
Data type Interaction
Biological species in the main concern
"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of use Attribution&Share Alike
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2012/07/23 (2012/07/24)
Main IDs used in the products Complex ID (original) | H-Inv cluster ID (HIX) | H-Inv transcript ID (HIT) | H-Inv protein ID (HIP) | UniProt Accession Number | RefSeq ID | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed ID
How to make a link to get access to each IDs. http://hinv.jp/hinv/pcdq/complex_view.cgi?clx_id=24 (In case of complex ID = 24) | http://hinv.jp/hinv/pcdq/ppi_view.cgi?hip=HIP000013164 (In case of HIP ID = HIP000013164)
external databases to which this database/tool have links

HIP | HIT | HIX | UniProt | RefSeq | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed

Published papers (PubMed IDs)

pmid:23282181