Database

PCDq

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NamePCDq
AliasesProtein Complex Database with complex quality index
Description"PCDq is a human protein complex database with quality check index (QCI), which describes evidence levels as subunits (protein members) of the protein complex. In total, 1,319 human protein complexes were firstly predicted by finding densely connected regions with cluster properties in the PPI network integrated from six PPI data (BIND, DIP, MINT, HPRD, IntAct, and GNP_Y2H). Then they were curated with the literature so that PCDq consists of both known and predicted complexes/subunits. The evidence level for each subunit were also annotated and summarized to a quality check index (QCI) for each protein complex. PCDq can also show the complicated PPI sub-networks in a simple, editable graphical view ""PPI-Map"". "
TypeDB
Main Institutes of management"Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttp://www.h-invitational.jp/hinv/pcdq/
InterfaceGUI
Input example"At the left down side of the main panel, input UniProt ID P68034, for example, then click the "search" button."
Keywordprotein complex | protein-protein interaction | quality check index
Amount of the all data for download(Mbyte) | Method to obtain the all data.2.7MB|http://www.h-invitational.jp/hinv/dataset/download.cgi
External resources (databases) in building the product.H-InvDB | UniProt | RefSeq | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed
Data typeInteraction
Biological species in the main concern"Homo sapiens [Taxonomy_id: 9606, human]"
Conditions of useAttribution&Share Alike
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2015/06/17 (2019/07/03)
Main IDs used in the productsComplex ID (original) | H-Inv cluster ID (HIX) | H-Inv transcript ID (HIT) | H-Inv protein ID (HIP) | UniProt Accession Number | RefSeq ID | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed ID
How to make a link to get access to each IDs.http://hinv.jp/hinv/pcdq/complex_view.cgi?clx_id=24 (In case of complex ID = 24) | http://hinv.jp/hinv/pcdq/ppi_view.cgi?hip=HIP000013164 (In case of HIP ID = HIP000013164)
external databases to which this database/tool have linksHIP | HIT | HIX | UniProt | RefSeq | GeneID | CCDS | BIND | DIP | MINT | HPRD | IntAct | GNP_Y2H | PubMed
Published papers (PubMed IDs)pmid:23282181
Operational Statusavailable