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DescriptionBioDBScan is a free web-based application that alerts you when any data about genes, proteins, chemicals or drugs of your interest is newly released in world-renowned databases such as NCBI, Ensembl, DrugBank and others. It delivers an E-mail message every Monday if any data is detected by the Hyperlink Management System.BioDBScan was developed as a new function of PubMedScan by 2011-2012 METI Life-science Database Project. It is operated by Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology.
Main Institutes of managementMolecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
Input exampleRegister user name and e-mail address to PubMedScan. Move to BioDBScan, register IDs of your interest.E-mail reports about newly-released data will be delivered every Monday.
Keywordcontent filtering recommendation | content-based recommendation
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.Hyperlink Management System
Data typegenes, pathways, diseases, etc.
Biological species in the main concernHomo sapiens, Mus musculus, Rattus norvegicus, Ciona intestinalis
Conditions of useGPL
Frequency of updates (in last two years)52 times/year
Last date of updates (date of confirmation)2013/01/29 (2019/07/08)
Main IDs used in the productsAccession Number | CIPRO ID | Clone ID (NBRC) | DGV ID | DrugBank ID | Ensembl Gene ID | Ensembl Protein ID | Ensembl Transcript ID | FLJ ID (NBRC) | GeneID | H-GOLD Marker ID | H-Inv cluster ID (HIX) | H-Inv protein ID (HIP) | H-Inv transcript ID (HIT) | HPRD ID | HUGO gene symbol | KEGG Gene ID | KEGG Pathway ID | OMIM ID | PDB ID | PdbeChem ID | Peptide Accession | PubMed ID | RefSeq ID | RefSeq Protein ID | UniProt Accession Number | dbSNP rs# (GemDBJ) | fRNAdb ID | ALLELE ID | BRC ID | Clone ID(FANTOM) | MGI Marker Accession ID | Mouse Gene Symbol RGD ID | CAS ID | ChEBI ID | DrugBank ID | HMDB Accession Number | KEGG Compound ID | KEGG Drug ID | KNApSAcK ID | NIKKAJI ID | PDBeChem ID | PharmGKB ID | PubChem Compound ID | PubChem Substance ID
How to make a link to get access to each IDs.Noe
external databases to which this database/tool have linksHyperlink Management System (http://biodb.jp/)
Published papers (PubMed IDs)None
Operational StatusClosed