Name Recount DB
Aliases None
Description

RecountDB is a database for corrected read counts and genome mapping on NCBI's Short Read Archive. The corrected count was done using RECOUNT and the mapping with LAST.

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site -
Interface GUI
Input example

"Input the keyword "SRX012261" in the text box on the center of the top page, push "Search" button."

Keyword
SRA | RECOUNT | LAST | TSS-Seq | RNA-Seq | MESH
Amount of the all data for download(Mbyte) | Method to obtain the all data. 52046|NA
External resources (databases) in building the product. NCBI | BIONET | ENSEMBL | UCSC | CANADIANGENOME | JGI | JCVI | SANGER | PLANTDB | TIGR | WASHINGTON UNIVERSITY GENOME CENTER | TOXODB
Data type RNA
Biological species in the main concern
"Aplysia californica | Acyrthosiphon pisum | Arabidopsis lyrata | ... More
  • Acyrthosiphon pisum [Taxonomy_id: 7029, pea aphid]
  • Aplysia californica [Taxonomy_id: 6500, California sea hare]
  • Arabidopsis lyrata [Taxonomy_id: 59689, lyrate rockcress]
  • Arabidopsis thaliana [Taxonomy_id: 3702, thale cress]
  • Bacillus anthracis [Taxonomy_id: 1392, anthrax]
  • Bombyx mori [Taxonomy_id: 7091, domestic silkworm]
  • Bos taurus [Taxonomy_id: 9913, cattle]
  • Brachypodium distachyon [Taxonomy_id: 15368]
  • Caenorhabditis elegans [Taxonomy_id: 6239]
  • Candida albicans [Taxonomy_id: 5476]
  • Cryptosporidium parvum [Taxonomy_id: 5807]
  • Dictyostelium discoideum [Taxonomy_id: 44689]
  • Dictyostelium purpureum [Taxonomy_id: 5786]
  • Drosophila melanogaster [Taxonomy_id: 7227, fruit fly]
  • Drosophila pseudoobscura [Taxonomy_id: 7237]
  • Drosophila simulans [Taxonomy_id: 7240]
  • Gallus gallus [Taxonomy_id: 9031, chicken]
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Listeria monocytogenes [Taxonomy_id: 1639]
  • Macaca mulatta [Taxonomy_id: 9544, Rhesus monkey]
  • Medicago truncatula [Taxonomy_id: 3880, barrel medic]
  • Mus musculus [Taxonomy_id: 10090, house mouse]
  • Nematostella vectensis [Taxonomy_id: 45351, starlet sea anemone]
  • Oryza sativa [Taxonomy_id: 4530, rice]
  • Pan troglodytes [Taxonomy_id: 9598, chimpanzee]
  • Plasmodium berghei [Taxonomy_id: 5821]
  • Plasmodium falciparum [Taxonomy_id: 5833, malaria parasite P. falciparum]
  • Plasmodium yoelii [Taxonomy_id: 5861]
  • Prunus persica [Taxonomy_id: 3760, peach]
  • Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast]
  • Schmidtea mediterranea [Taxonomy_id: 79327, freshwater planarian]
  • Sus scrofa [Taxonomy_id: 9823, pig]
  • Toxoplasma gondii [Taxonomy_id: 5811]
  • Trichoplax adhaerens [Taxonomy_id: 10228]
  • Triticum aestivum [Taxonomy_id: 4565, bread wheat]
  • Zea mays [Taxonomy_id: 4577, maize]
"
Conditions of use Unknown
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 2015/08/20 (2019/07/04)
Main IDs used in the products None
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

NCBI SRA(http://www.ncbi.nlm.nih.gov/sra/)

Published papers (PubMed IDs)

pmid:22139942

Operational Status

Closed