1. Home
  2. Tool
  3. 327



AliasesLimitless-Arity Multiple-testing Procedure
DescriptionLAMP is a code for multiple testing correction. Given the relationships between transcription factors (TFs) and genes and gene expression levels, the code lists up statistically significant combinations of TFs. The LAMP algorithm calibrates the Family-Wise Error Rate (FWER) at the same level of Bonferroni correction.
Main Institutes of managementBiotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://a-terada.github.io/lamp/
InputItem, Value(Text(CSV))
Input exampleWe present three examples (Mann-Whitney U-test, Fisher’s Exact Test, Analysis example of Human breast cancer dataset) of running LAMP. First two examples are toy examples, and the last one generates the exactly identical result shown in our paper.
KeywordBonferroni correction | gene expression
Amount of the all data for download(Mbyte) | Method to obtain the all data.216|https://github.com/a-terada/lamp/archive/2.0.3.tar.gz
External resources (databases) in building the product.unknown
Data typep-values of multiple testing correltions
Biological species in the main concernAll species
Conditions of useBSD
Frequency of updates (in last two years)unknown
Last date of updates (date of confirmation)2015/06/28 (2019/06/03)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)PMID:23882073
Operational StatusAvailable