| Name | HomeoRoq |
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| Aliases | Homeolog expression analysis softwares |
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| Description | HomeoRoq allows us to quantify ratios of homeolog expression levels in allopolyploid species, and links to genome sequences and raw reads of A. halleri subsp. gemmifera and A. lyrata subsp. petraea.HomeoRoq is a pipeline to detect statistically significant changes in the homeolog-specific expression ratios under different conditions using RNA-seq data |
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| Type | Tool |
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| Main Institutes of management | Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://seselab.org/homeoroq/ |
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| Interface | CUI |
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| Input | Nucleic acid sequence(FASTA format) |
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| Output | Statistics(Text) |
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| Input example | Make indexes of both parental genome sequences. $ star --runMode genomeGenerate --genomeDir [Parent 1 dir] --genomeFastaFiles [Parent1_genome.fas] --runThreadN [Arbitrary value] --limitGenomeGenerateRAM [Arbitrary value] |
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| Keyword | homeolog |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 10.5|http://seselab.org/homeoroq/homeoroq_140811.zip |
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| External resources (databases) in building the product. | unknown |
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| Data type | protein - amino-acid sequence |
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| Biological species in the main concern | All species |
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| Conditions of use | none |
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| Frequency of updates (in last two years) | unknown |
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| Last date of updates (date of confirmation) | 2014/08/11 (2019/07/09) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | PMID:24423873 |
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| Operational Status | Available |
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