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AliasesHomeolog expression analysis softwares
DescriptionHomeoRoq allows us to quantify ratios of homeolog expression levels in allopolyploid species, and links to genome sequences and raw reads of A. halleri subsp. gemmifera and A. lyrata subsp. petraea.HomeoRoq is a pipeline to detect statistically significant changes in the homeolog-specific expression ratios under different conditions using RNA-seq data
Main Institutes of managementBiotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://seselab.org/homeoroq/
InputNucleic acid sequence(FASTA format)
Input example Make indexes of both parental genome sequences. $ star --runMode genomeGenerate --genomeDir [Parent 1 dir] --genomeFastaFiles [Parent1_genome.fas] --runThreadN [Arbitrary value] --limitGenomeGenerateRAM [Arbitrary value]
Amount of the all data for download(Mbyte) | Method to obtain the all data.10.5|http://seselab.org/homeoroq/homeoroq_140811.zip
External resources (databases) in building the product.unknown
Data typeprotein - amino-acid sequence
Biological species in the main concernAll species
Conditions of usenone
Frequency of updates (in last two years)unknown
Last date of updates (date of confirmation)2014/08/11 (2019/07/09)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)PMID:24423873
Operational StatusAvailable