Name HomeoRoq
Aliases Homeolog expression analysis softwares
Description

"HomeoRoq allows us to quantify ratios of homeolog expression levels in allopolyploid species, and links to genome sequences and raw reads of A. halleri subsp. gemmifera and A. lyrata subsp. petraea.HomeoRoq is a pipeline to detect statistically significant changes in the homeolog-specific expression ratios under different conditions using RNA-seq data"

Type Tool
Main Institutes of management "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://seselab.org/homeoroq/
Interface CUI
Input

Nucleic acid sequence(FASTA format)

Output

Statistics(Text)

Input example

Make indexes of both parental genome sequences. $ star --runMode genomeGenerate --genomeDir [Parent 1 dir] --genomeFastaFiles [Parent1_genome.fas] --runThreadN [Arbitrary value] --limitGenomeGenerateRAM [Arbitrary value]

Keyword
homeolog
Amount of the all data for download(Mbyte) | Method to obtain the all data. 10.5|http://seselab.org/homeoroq/homeoroq_140811.zip
External resources (databases) in building the product. unknown
Data type protein - amino-acid sequence
Biological species in the main concern
All species
Conditions of use none
Frequency of updates (in last two years) unknown
Last date of updates (date of confirmation) 2014/08/11 (2019/07/09)
Main IDs used in the products None
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

PMID:24423873

Operational Status

Available