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AliasesSomatic Large Structural Variation Detector
DescriptionCOSMOS can detect somatic structural variations from whole genome short-read sequences. Also, it can be applicable to de novo SV detection in a family trio
Main Institutes of managementBiotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://seselab.org/cosmos/
InputChromosome location(BAM format)
Input exampleSimple example. %bash cosmos.sh cosmos_example/tumor.bam cosmos_example/normal.bam
KeywordSomatic structural variations
Amount of the all data for download(Mbyte) | Method to obtain the all data.15.9|http://seselab.org/cosmos/cosmos.zip
External resources (databases) in building the product.unknown
Data typeDNA-sequnece
Biological species in the main concernAll species
Conditions of usenone
Frequency of updates (in last two years)unknown
Last date of updates (date of confirmation)2016/00/00 (2019/07/09)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)
Operational StatusAvailable