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AliasesConvert ChIP-seq and RNA-seq results to input files of LAMP
DescriptionDiscovery of combinatorial regulations is a key to understand complex gene regulation machineries. Combining this scripts (chip2lamp) with a statistical analysis LAMP allows us to find statistically significant combinations by integrating ChIP-seqs and RNA-seqs. This can handle MACS1/2 result as a ChIP-seq peak caller and Cuffdiff result from RNA-seq.
Main Institutes of managementBiotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://seselab.org/chip2lamp/
InputGenomic location(BED format)
OutputStatistics of genomic location(Text)
Input exampleIf you run chip2lamp, this generates three files: test_dist.txt, test_exp.txt and test_peak.txt. If you run LAMP, this store the result in test_lamp_res.txt.
Amount of the all data for download(Mbyte) | Method to obtain the all data.8.2M|http://seselab.org/chip2lamp/chip2lamp-1.0.zip
External resources (databases) in building the product.unknown
Data typeChIP-sequence, RNA-sequence
Biological species in the main concernAll species
Conditions of usenone
Frequency of updates (in last two years)unknown
Last date of updates (date of confirmation)2015/06/27 (2019/06/03)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)
Operational StatusAvailable