| Name | ChIP2LAMP |
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| Aliases | Convert ChIP-seq and RNA-seq results to input files of LAMP |
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| Description | Discovery of combinatorial regulations is a key to understand complex gene regulation machineries. Combining this scripts (chip2lamp) with a statistical analysis LAMP allows us to find statistically significant combinations by integrating ChIP-seqs and RNA-seqs. This can handle MACS1/2 result as a ChIP-seq peak caller and Cuffdiff result from RNA-seq. |
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| Type | Tool |
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| Main Institutes of management | Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://seselab.org/chip2lamp/ |
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| Interface | CUI |
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| Input | Genomic location(BED format) |
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| Output | Statistics of genomic location(Text) |
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| Input example | If you run chip2lamp, this generates three files: test_dist.txt, test_exp.txt and test_peak.txt. If you run LAMP, this store the result in test_lamp_res.txt. |
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| Keyword | |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 8.2M|http://seselab.org/chip2lamp/chip2lamp-1.0.zip |
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| External resources (databases) in building the product. | unknown |
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| Data type | ChIP-sequence, RNA-sequence |
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| Biological species in the main concern | All species |
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| Conditions of use | none |
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| Frequency of updates (in last two years) | unknown |
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| Last date of updates (date of confirmation) | 2015/06/27 (2019/06/03) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | |
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| Operational Status | Available |
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