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Aliasesdetection of statistically significant epistatic interactions
DescriptionThe LAMPLINK can detect statistically significant epistatic interactions of two or more SNPs from GWAS data. This software can be used in the same way as the widely used GWAS analysis software PLINK, but LAMPLINK has the additional options for the detection of epistatic interactions with LAMP, which is a multiple testing procedure for combinatorial effects discovery.
Main Institutes of managementBiotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://a-terada.github.io/lamplink/
InputSNP(MAP,PED format)
Input exampleWe show an example of LAMPLINK using a sample GWAS dataset in example.
Amount of the all data for download(Mbyte) | Method to obtain the all data.105|https://github.com/a-terada/lamplink/archive/master.zip
External resources (databases) in building the product.
Data typeDNA-sequnece
Biological species in the main concernAll species
Conditions of usenone
Frequency of updates (in last two years)unknown
Last date of updates (date of confirmation)2017/05/19 (2019/06/03)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)PMID:23882073 | PMID:17701901
Operational StatusAvailable