Name LAMPLINK
Aliases detection of statistically significant epistatic interactions
Description

"The LAMPLINK can detect statistically significant epistatic interactions of two or more SNPs from GWAS data. This software can be used in the same way as the widely used GWAS analysis software PLINK, but LAMPLINK has the additional options for the detection of epistatic interactions with LAMP, which is a multiple testing procedure for combinatorial effects discovery."

Type Tool
Main Institutes of management "Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site http://a-terada.github.io/lamplink/
Interface CUI
Input

"SNP(MAP,PED format)"

Output

Statistics(Text(TSV))

Input example

We show an example of LAMPLINK using a sample GWAS dataset in example.

Keyword
Amount of the all data for download(Mbyte) | Method to obtain the all data. 105|https://github.com/a-terada/lamplink/archive/master.zip
External resources (databases) in building the product.
Data type DNA-sequnece
Biological species in the main concern
All species
Conditions of use none
Frequency of updates (in last two years) unknown
Last date of updates (date of confirmation) 2017/05/19 (2019/06/03)
Main IDs used in the products None
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

PMID:23882073 | PMID:17701901

Operational Status

Available