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DescriptionPSTAG (Pair Stochastic Tree Adjoining Grammars) is for RNA sequences including pseudoknotted structures.The program based on PSTAGs is the first grammar-based and practically executable software for comparative analyses of RNA pseudoknot structures, and, further, non-coding RNAs (cited from the original site).
Main Institutes of managementKeio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://pstag.dna.bio.keio.ac.jp/
Input examplestep1: Push "Example" button on the upper side of the search page (http://pstag.dna.bio.keio.ac.jp/search.html).step2. Push "Submit" button on the downside of the page.
Keywordhidden Markov models | unfolded RNA sequence | secondary structure
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.52|Download pstag2_1_4a-src.tar.bz2 from the page http://pstag.dna.bio.keio.ac.jp/download.html
External resources (databases) in building the product.None
Data typeRNA
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)0 time
Last date of updates (date of confirmation)2004/12/10 (2019/07/09)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:15784748
Operational StatusAvailable