Name | PSTAG |
Aliases | None |
Description | PSTAG (Pair Stochastic Tree Adjoining Grammars) is for RNA sequences including pseudoknotted structures.The program based on PSTAGs is the first grammar-based and practically executable software for comparative analyses of RNA pseudoknot structures, and, further, non-coding RNAs (cited from the original site). |
Type | Tool |
Main Institutes of management | Keio University | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | http://pstag.dna.bio.keio.ac.jp/ |
Interface | GUI |
Input | |
Output | |
Input example | step1: Push "Example" button on the upper side of the search page (http://pstag.dna.bio.keio.ac.jp/search.html).step2. Push "Submit" button on the downside of the page. |
Keyword | hidden Markov models | unfolded RNA sequence | secondary structure |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | 0.52|Download pstag2_1_4a-src.tar.bz2 from the page http://pstag.dna.bio.keio.ac.jp/download.html |
External resources (databases) in building the product. | None |
Data type | RNA |
Biological species in the main concern | All species |
Conditions of use | None |
Frequency of updates (in last two years) | 0 time |
Last date of updates (date of confirmation) | 2004/12/10 (2019/07/09) |
Main IDs used in the products | N/A |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | None |
Published papers (PubMed IDs) | pmid:15784748 |
Operational Status | Available |