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Stem Kernels

NameStem Kernels
DescriptionStem Kernels is a kernel function for structural RNAs to measure a kind of similarity between a pair of RNA sequences from the viewpoint of secondary structures (cited from the original site).
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
Input examplestem_kernel_lite -n pre-computed-kernel-matrix +1 input_positive_seq(FASTA format) -1 input_negative_seq(FASTA format)
Keywordkarnel function | RNA sequence | directed acyclic graphs | DAGs
Amount of the all data for download(Mbyte) | Method to obtain the all data.None
External resources (databases) in building the product.None
Data typeRNA
Biological species in the main concernAll species
Conditions of useGPL
Frequency of updates (in last two years)None
Last date of updates (date of confirmation)2011/03/12 (2019/07/05)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:18647390 | pmid:17933013
Operational StatusClosed