1. Home
  2. Tool
  3. 163

Tool

CentroidAlign

noimage
NameCentroidAlign
AliasesNone
Description"An accurate and fast aligner for multiple RNA sequences, based on maximizing the expected sum-of-pair score (SPS). You can get the archive file for linux and windows (cited from the original site)."
TypeTool
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the site-
InterfaceCUI
Input
Output
Input example"To make multiple RNA sequences align, you type like this: ./centroid_align [options] seq-file(fasta format)"
KeywordSPS | multiple RNA sequences
Amount of the all data for download(Mbyte) | Method to obtain the all data.None
External resources (databases) in building the product.None
Data typeRNA alignment
Biological species in the main concernAll species
Conditions of use"CentroidHomfold uses several codes taken from the following software. Please make sure ""License.txt"" included in the download file."
Frequency of updates (in last two years)1 time / year
Last date of updates (date of confirmation)2010/01/01 (2019/07/05)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:19808876
Operational StatusClosed