DescriptionWe have developed statistical and SVM based methods for discriminating beta barrel membrane proteins from amino acid sequence. The amino acid composition, residue pair preference and motifs are the major attributes for the program. 5 programs (TMBETADISC-COMP, TMBETADISC-DIPEPTIDE, TMBETADISC-MOTIF, TMBETADISC-SVM, TMBETADISC-RBF) was included in TMBETADISC (cited from the original site).
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site
Input exampleInput example for TMBETADISC-RBF:Input amino acid sequences (FASTA-format) in the text box, push "submit" button. There is samples sequences on the down side of the top page.
KeywordSVM | amino acid composition | residue pair composition | motif composition | PSSM
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.None
Data typeProtein-AminoAcid
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)2015/08/20 (2019/07/02)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:18434251 | pmid:16204348 | pmid:15980447 | pmid:15833441 | pmid:15531602
Operational StatusClosed