Name SokanProject
Aliases None
Description

This program is a JAVA program which calculates Pearson product-moment correlation coefficient from large matrix of numeric values by best-subset selection procedure with a parameter and outputs a result text file. It can calculate correlations of co-expressed genes or co-accumulated metabolite peaks from multiple experiments of microarray or non-targeted metabolome analysis. The resulting output file can apply to search functionally related gene or metabolite candidates of target gene or metabolite and correlation-based network analysis using other program or script. The program also can apply small-scale dataset.

Type Tool
Main Institutes of management Kazusa DNA Research Institute (KDRI)
Country of the Institute Japan
URL of the site http://www.kazusa.or.jp/komics/en/tool-en/39-sokanproject.html
Interface GUI
Input

Output

Input example

"After setting a file with data matrix by "Select File" and parameters, data processing is start by cricking "Start" button and output file is saved automatically."

Keyword
Pearson product-moment correlation coefficient | DNA microarray | coexpression
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0.42|Dowonload http://www.kazusa.or.jp/komics/images/komics/tool/SokanProject/SokanProject.zip
External resources (databases) in building the product. None
Data type Gene expression
Biological species in the main concern
All species
Conditions of use "This software is academic free, and is not allowed to use for commercial purpose."
Frequency of updates (in last two years) 0 time
Last date of updates (date of confirmation) 2005/07/00 (2019/07/09)
Main IDs used in the products N/A
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

None

Operational Status

Available