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SokanProject

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NameSokanProject
AliasesNone
DescriptionThis program is a JAVA program which calculates Pearson product-moment correlation coefficient from large matrix of numeric values by best-subset selection procedure with a parameter and outputs a result text file. It can calculate correlations of co-expressed genes or co-accumulated metabolite peaks from multiple experiments of microarray or non-targeted metabolome analysis. The resulting output file can apply to search functionally related gene or metabolite candidates of target gene or metabolite and correlation-based network analysis using other program or script. The program also can apply small-scale dataset.
TypeTool
Main Institutes of managementKazusa DNA Research Institute (KDRI)
Country of the InstituteJapan
URL of the sitehttp://www.kazusa.or.jp/komics/en/tool-en/39-sokanproject.html
InterfaceGUI
Input
Output
Input exampleAfter setting a file with data matrix by "Select File" and parameters, data processing is start by cricking "Start" button and output file is saved automatically.
KeywordPearson product-moment correlation coefficient | DNA　microarray | coexpression
Amount of the all data for download（Mbyte） | Method to obtain the all data.0.42|Dowonload http://www.kazusa.or.jp/komics/images/komics/tool/SokanProject/SokanProject.zip
External resources (databases) in building the product.None
Data typeGene expression
Biological species in the main concernAll species
Conditions of useThis software is academic free, and is not allowed to use for commercial purpose.
Frequency of updates (in last two years)0 time
Last date of updates (date of confirmation)2005/07/00 (2019/07/09)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)None
Operational StatusAvailable
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