| Name | Data mining analysis of supersecondary structure |
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| Aliases | None |
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| Description | The DCCP method (Dictionary of Conformational Code in Proteins) converts 3D information of protein X-ray crystal structure data to 1D information, and converts. Its conformation describe with only three kinds of codes into α helix pattern h, β sheet type pattern s, and other types pattern o. Especially useful for data mining of hyper-secondary structure like loop with complicated structure, it is useful for analysis of polymorphism of proteins with similar structures but amino acid sequences are very different. |
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| Type | Tool |
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| Main Institutes of management | Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | https://staff.aist.go.jp/izumi.h/SupersecondaryStructure/index.html |
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| Interface | WINDOWS version program available |
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| Input | Amino acid sequence(FASTA format) |
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| Output | Secondary structure |
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| Input example | Unknown |
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| Keyword | DSSP, DCCP, Secondary structure |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 13KB|https://researchmap.jp/muf10vbx5-2132135/#_2132135 |
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| External resources (databases) in building the product. | Unknown |
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| Data type | Protein structure |
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| Biological species in the main concern | None |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | Unknown |
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| Last date of updates (date of confirmation) | 2013/00/00 (2019/07/09) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | PMID:23394723 |
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| Operational Status | Available |
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