Name Data mining analysis of supersecondary structure
Aliases None
Description

"The DCCP method (Dictionary of Conformational Code in Proteins) converts 3D information of protein X-ray crystal structure data to 1D information, and converts. Its conformation describe with only three kinds of codes into α helix pattern h, β sheet type pattern s, and other types pattern o. Especially useful for data mining of hyper-secondary structure like loop with complicated structure, it is useful for analysis of polymorphism of proteins with similar structures but amino acid sequences are very different."

Type Tool
Main Institutes of management "Environmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site https://staff.aist.go.jp/izumi.h/SupersecondaryStructure/index.html
Interface WINDOWS version program available
Input

Amino acid sequence(FASTA format)

Output

Secondary structure

Input example

Unknown

Keyword
"DSSP, DCCP, Secondary structure"
Amount of the all data for download(Mbyte) | Method to obtain the all data. 13KB|https://researchmap.jp/muf10vbx5-2132135/#_2132135
External resources (databases) in building the product. Unknown
Data type Protein structure
Biological species in the main concern
None
Conditions of use None
Frequency of updates (in last two years) Unknown
Last date of updates (date of confirmation) 2013/00/00 (2019/07/09)
Main IDs used in the products None
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

PMID:23394723

Operational Status

Available