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Data mining analysis of supersecondary structure

NameData mining analysis of supersecondary structure
DescriptionThe DCCP method (Dictionary of Conformational Code in Proteins) converts 3D information of protein X-ray crystal structure data to 1D information, and converts. Its conformation describe with only three kinds of codes into α helix pattern h, β sheet type pattern s, and other types pattern o. Especially useful for data mining of hyper-secondary structure like loop with complicated structure, it is useful for analysis of polymorphism of proteins with similar structures but amino acid sequences are very different.
Main Institutes of managementEnvironmental Management Research Institute (EMRI), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttps://staff.aist.go.jp/izumi.h/SupersecondaryStructure/index.html
InterfaceWINDOWS version program available
InputAmino acid sequence(FASTA format)
OutputSecondary structure
Input exampleUnknown
KeywordDSSP, DCCP, Secondary structure
Amount of the all data for download(Mbyte) | Method to obtain the all data.13KB|https://researchmap.jp/muf10vbx5-2132135/#_2132135
External resources (databases) in building the product.Unknown
Data typeProtein structure
Biological species in the main concernNone
Conditions of useNone
Frequency of updates (in last two years)Unknown
Last date of updates (date of confirmation)2013/00/00 (2019/07/09)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)PMID:23394723
Operational StatusAvailable