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NameKaPPA-View4 KEGG
AliasesThe Kazusa Plant Pathway Viewer4 KEGG
DescriptionKaPPA-View4 is metabolic pathway database which is aimed to better understand metabolic regulation and to generate hypotheses from huge public available 'omics' data, i.e. transcriptome, metabolome, gene-to-gene co-expressions and metabolite-to-metabolite co-accumulations.KaPPA-View4 KEGG is one of the KaPPA-View4 version that has the pathway map data from the Kyoto Encylcopedia of Genes and Genomes (KEGG), and includes species infromation of animals, plants and microorganisms. Gene family maps generated from the "Genes and Proteins"classification of KEGG BRITE are also available. (cited from original site)
Main Institutes of managementKazusa DNA Research Institute (KDRI)
Country of the InstituteJapan
URL of the sitehttp://kpv.kazusa.or.jp/kpv4-kegg/
InputMicroarray data(Text(CSV))
Input exampleAt first, push "Enter" button of the top page and next, click the menu "Mapview". Select a name of species (or "Universal") from the pull down list.Click on a map or a map category on the metabolic pathway tree.
Keywordtranscriptom | metabolom | omics | plants | animals | microorganisms | pathway
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.0|Download from the page http://kpv.kazusa.or.jp/kpv4-kegg/download/index.action
External resources (databases) in building the product.KEGG (http://www.genome.jp/kegg/)
Data typeMetabolite repression Pathway
Biological species in the main concernAll species
Conditions of useUser account is required (Non-academic users and Academic users intending to use KEGG for commercial purposes are requested to obtain a license agreement through KEGG's exclusive licensing agent, Pathway Solutions, for installation of KEGG at their sites.)
Frequency of updates (in last two years)Three times for a year.
Last date of updates (date of confirmation)2013/06/19 (2019/07/09)
Main IDs used in the productsmapID | mapNumber
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksKEGG (http://www.genome.jp/kegg/)
Published papers (PubMed IDs)pmid:16010003 | Sakurai N and Shibata D (2006) KaPPA-View for integrating quantitative transcriptomic and metabolomic data on plant metabolic pathway maps. J Pesticide Science, 31, 293-295 | Tokimatsu T, Sakurai N, Suzuki H and Shibata D (2006) KaPPA-View: A tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps. In Saito K, Dixon RA and Willmitzer L eds, Biotechnology in Agriculture and Forestry, Vol. 57, pp. 155-163, Springer-Verlag, Berlin Heidelberg | Ogata Y, Sakurai N, Provart NJ, Steinhauser D and Krall L (2008) Bioinformatics Tools to Discover Co-Expressed Genes in Plants. In Kahl G and Meksem K eds, The Handbook of Plant Functional Genomics: Concepts and Protocols, pp. 309-335, WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
Operational StatusAvailable