| Name | KaPPA-View4 KEGG |
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| Aliases | The Kazusa Plant Pathway Viewer4 KEGG |
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| Description | KaPPA-View4 is metabolic pathway database which is aimed to better understand metabolic regulation and to generate hypotheses from huge public available 'omics' data, i.e. transcriptome, metabolome, gene-to-gene co-expressions and metabolite-to-metabolite co-accumulations.KaPPA-View4 KEGG is one of the KaPPA-View4 version that has the pathway map data from the Kyoto Encylcopedia of Genes and Genomes (KEGG), and includes species infromation of animals, plants and microorganisms. Gene family maps generated from the "Genes and Proteins"classification of KEGG BRITE are also available. (cited from original site) |
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| Type | Tool |
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| Main Institutes of management | Kazusa DNA Research Institute (KDRI) |
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| Country of the Institute | Japan |
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| URL of the site | http://kpv.kazusa.or.jp/kpv4-kegg/ |
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| Interface | GUI |
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| Input | Microarray data(Text(CSV)) |
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| Output | Pathway |
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| Input example | At first, push "Enter" button of the top page and next, click the menu "Mapview". Select a name of species (or "Universal") from the pull down list.Click on a map or a map category on the metabolic pathway tree. |
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| Keyword | transcriptom | metabolom | omics | plants | animals | microorganisms | pathway |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0.0|Download from the page http://kpv.kazusa.or.jp/kpv4-kegg/download/index.action |
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| External resources (databases) in building the product. | KEGG (http://www.genome.jp/kegg/) |
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| Data type | Metabolite repression Pathway |
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| Biological species in the main concern | All species |
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| Conditions of use | User account is required (Non-academic users and Academic users intending to use KEGG for commercial purposes are requested to obtain a license agreement through KEGG's exclusive licensing agent, Pathway Solutions, for installation of KEGG at their sites.) |
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| Frequency of updates (in last two years) | Three times for a year. |
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| Last date of updates (date of confirmation) | 2013/06/19 (2019/07/09) |
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| Main IDs used in the products | mapID | mapNumber |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | KEGG (http://www.genome.jp/kegg/) |
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| Published papers (PubMed IDs) | pmid:16010003 | Sakurai N and Shibata D (2006) KaPPA-View for integrating quantitative transcriptomic and metabolomic data on plant metabolic pathway maps. J Pesticide Science, 31, 293-295 | Tokimatsu T, Sakurai N, Suzuki H and Shibata D (2006) KaPPA-View: A tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps. In Saito K, Dixon RA and Willmitzer L eds, Biotechnology in Agriculture and Forestry, Vol. 57, pp. 155-163, Springer-Verlag, Berlin Heidelberg | Ogata Y, Sakurai N, Provart NJ, Steinhauser D and Krall L (2008) Bioinformatics Tools to Discover Co-Expressed Genes in Plants. In Kahl G and Meksem K eds, The Handbook of Plant Functional Genomics: Concepts and Protocols, pp. 309-335, WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim |
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| Operational Status | Available |
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