Name | MAFFT |
Aliases | Multiple alignment program for amino acid or nucleotide sequences |
Description | MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of 200 sequences), FFT-NS-2 (fast; for alignment of 10,000 sequences), etc.Download version (MacOS X, Windows, Linux, Source) and Online version is ready (cited from the original site). |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | http://mafft.cbrc.jp/alignment/software/ |
Interface | GUI | CUI |
Input | Nucleic acid or Amino acid sequence(FASTA format) |
Output | |
Input example | To make all multiple alignment, you type like this: mafft [options] input_seq (FASTA format) > output_seq |
Keyword | multiple alignment | L-INS-i | FFT-NS-2 |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | 15.8|Download from the page http://mafft.cbrc.jp/alignment/software/ |
External resources (databases) in building the product. | None |
Data type | DNA-sequence alignment |
Biological species in the main concern | All species |
Conditions of use | GPL |
Frequency of updates (in last two years) | 29 |
Last date of updates (date of confirmation) | 2019/05/00 (2019/06/03) |
Main IDs used in the products | N/A |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | N/A |
Published papers (PubMed IDs) | pmid:23329690 | pmid:23023983 | pmid:20427515 | pmid:19378139 | pmid:18439255 | pmid:18372315 | pmid:17118958 | pmid:15661851 | pmid:12136088 | pmid:23329690 |
Operational Status | Available |