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DescriptionRECOUNT is a software for estimating the true count of Solexa readsbased on a probabilistic model. RECOUNT uses the quality score provided by Solexa and the reads as its input. Typical application of this software is for transcriptome or metagenomic expression analysis (cited from the original site).
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
Input exampleYou can run recount by executing the wrapper written in Perl.The command is simply:perl recount.pl <input><no_of_neighbor_mismatch>
KeywordProbabilistic Error Correction
Amount of the all data for download(Mbyte) | Method to obtain the all data.0.118|http://seq.cbrc.jp/recount/archive/
External resources (databases) in building the product.None
Data typeDNA-sequence  Next Generation Sequencing Data
Biological species in the main concernAll species
Conditions of useGPL
Frequency of updates (in last two years)2 times / year
Last date of updates (date of confirmation)2010/09/24 (2019/06/03)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:20180274
Operational StatusClosed