| Name | SAMURAI |
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| Aliases | System for Assembling Modules by Ultra Rapid Algorithm on Itemsets |
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| Description | Gene expression networks have different gene components depending on the cell types. SAMURAI is a tool for finding such minimal functional units of genes called modules from large-scale gene expression data. Modules are searched against by an ultra fast and exhaustive biclustering method using a closed itemset mining algorithm.suspending for relocation. (confirmation on 2012/11/05) |
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| Type | Tool |
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| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | http://samurai.cbrc.jp/cgi-bin/index.cgi |
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| Interface | GUI |
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| Input | |
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| Output | |
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| Input example | Select database and evaluation. Input the query in the text box and parameter, and then push "Extract Module" button. |
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| Keyword | Index Terms?biclustering | closed itemset | gene expression module | LCM (Linear time Closed itemset Miner) |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 1,707|Download from the page http://samurai.cbrc.jp/download/ |
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| External resources (databases) in building the product. | KEGG | GO | NCBI |
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| Data type | Gene expression |
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| Biological species in the main concern | All species |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | 5 |
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| Last date of updates (date of confirmation) | 2008/08/21 (2019/07/09) |
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| Main IDs used in the products | UniGene ID |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | NCBI (http://www.ncbi.nlm.nih.gov/unigene) |
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| Published papers (PubMed IDs) | Yoshifumi Okada and Wataru Fujibuchi, "Mining a Large-scale Microarray Database for Similar Gene Expression Modules to Find Distant Relationships between Down Syndrome and Huntington's Disease", CAMDA 2007, Valensia, Spain, 2007 | Yoshifumi Okada, Kosaku Okubo, Paul Horton and Wataru Fujibuchi, "Exhaustive Search Method of Gene Expression Modules and Its Application to Human Tissue Data", IAENG International Journal of Computer Science, Vol. 34 Issue 1, pp.119-126, 2007 | Yoshifumi Okada, Wataru Fujibuchi and Paul Horton, "A biclustering method for gene expression module discovery using closed itemset enumeration algorithm", IPSJ Transactions on Bioinformatics, Vol. 48 no. SIG 5(TBIO2), pp.39-48, 2007. |
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| Operational Status | Available |
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