Name | GRIFFIN |
Aliases | G-protein Receptor Interacting Feature Finding INstrument |
Description | It is a high-throughput system to predict GPCR - G-protein coupling selectively with the input of GPCR sequence and ligand molecular weight. This system consists of two parts:1) HMM section using family specific multiple alignment of GPCRs, 2)SVM section using physico-chemical feature vectors in GPCR sequence. |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | - |
Interface | GUI |
Input | |
Output | |
Input example | Enter potential GPCR sequence in the text box, and push "Predict" button. |
Keyword | G-protein coupling receptor|prediction |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | -|None |
External resources (databases) in building the product. | None |
Data type | Ptotein-sequence , amino acid sequence |
Biological species in the main concern | All species |
Conditions of use | None |
Frequency of updates (in last two years) | 3 |
Last date of updates (date of confirmation) | 2005/08/03 (2019/06/03) |
Main IDs used in the products | None |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | None |
Published papers (PubMed IDs) | Yabuki Y, Muramatsu T, Hirokawa T, Mukai H and Suwa M (2005). Nucleic Acids Res , 33 , W148-153. |
Operational Status | Closed |