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Tool

SlideSort

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NameSlideSort
AliasesNone
DescriptionSlideSort is fast and exact method that can find all similar pairs from a string pool in terms of edit distance (cited from the original site).
TypeTool
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the sitehttp://cbrc3.cbrc.jp/~shimizu/slidesort/index.php
InterfaceCUI | GUI
InputNucleic acid or Amino acid sequence(FASTA format)
Output
Input example"To find all similar pairs from DNA sequences or protein sequences, you type like this: slidesort -i input_seq-file(fasta format) -o output_file [options]"
Keywordedit distance | Levenshtein distance
Amount of the all data for download(Mbyte) | Method to obtain the all data.31|Download from the page http://cbrc3.cbrc.jp/~shimizu/slidesort/index.php?Download
External resources (databases) in building the product.None
Data typeDNA-sequence  Protein-sequence
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)3 times / year
Last date of updates (date of confirmation)2015/04/21 (2019/07/09)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:21148542
Operational StatusAvailable