Name | SlideSort |
Aliases | None |
Description | SlideSort is fast and exact method that can find all similar pairs from a string pool in terms of edit distance (cited from the original site). |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | http://cbrc3.cbrc.jp/~shimizu/slidesort/index.php |
Interface | CUI | GUI |
Input | Nucleic acid or Amino acid sequence(FASTA format) |
Output | |
Input example | To find all similar pairs from DNA sequences or protein sequences, you type like this: slidesort -i input_seq-file(fasta format) -o output_file [options] |
Keyword | edit distance | Levenshtein distance |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | 31|Download from the page http://cbrc3.cbrc.jp/~shimizu/slidesort/index.php?Download |
External resources (databases) in building the product. | None |
Data type | DNA-sequence Protein-sequence |
Biological species in the main concern | All species |
Conditions of use | None |
Frequency of updates (in last two years) | 3 times / year |
Last date of updates (date of confirmation) | 2015/04/21 (2019/07/09) |
Main IDs used in the products | N/A |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | N/A |
Published papers (PubMed IDs) | pmid:21148542 |
Operational Status | Available |