Name | NGSFeatGen |
Aliases | Next Generation Sequencing Feature Generation |
Description | This software is a framework for predicting true reads from the next generation sequencing data. This software generates several key features: observed count, estimate true count, loglikelihood with entropy penalty, loglikelihood ratio, expectation matching score, and specific correction coefficient. |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | - |
Interface | CUI |
Input | |
Output | |
Input example | You can run recount by executing the wrapper written in Perl.The command is simply:perl ngsfeatgen.pl <input> |
Keyword | NGS|Classification|Illumina|Solexa |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | |
External resources (databases) in building the product. | None |
Data type | DNA-sequence NGS |
Biological species in the main concern | All species |
Conditions of use | None |
Frequency of updates (in last two years) | 0 time/year |
Last date of updates (date of confirmation) | 2010/03/22 (2019/07/08) |
Main IDs used in the products | None |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | None |
Published papers (PubMed IDs) | pmid:23349826 | pmid:23413433 |
Operational Status | Closed |