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Tool

NGSFeatGen

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NameNGSFeatGen
AliasesNext Generation Sequencing Feature Generation
DescriptionThis software is a framework for predicting true reads from the next generation sequencing data. This software generates several key features: observed count, estimate true count, loglikelihood with entropy penalty, loglikelihood ratio, expectation matching score, and specific correction coefficient.
TypeTool
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
InterfaceCUI
Input
Output
Input exampleYou can run recount by executing the wrapper written in Perl.The command is simply:perl ngsfeatgen.pl <input>
KeywordNGS|Classification|Illumina|Solexa
Amount of the all data for download(Mbyte) | Method to obtain the all data.
External resources (databases) in building the product.None
Data typeDNA-sequence NGS
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)0 time/year
Last date of updates (date of confirmation)2010/03/22 (2019/07/08)
Main IDs used in the productsNone
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:23349826 | pmid:23413433
Operational StatusClosed