| Name | SCARNA Local Multiple |
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| Aliases | SCARNA_LM |
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| Description | SCARNA_LM (SCARNA Local Multiple) is a local multiple aligner for RNA sequences. It is based on a discriminative pairwise alignment model which incorporates secondary structure features as base pairing probability calculrated by Rfold, and uses an efficient local multiple alignment construction procedure proposed by Phuong et al for local multiple alignment of protein sequences (cited from the original site). |
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| Type | Tool |
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| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | - |
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| Interface | CUI |
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| Input | |
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| Output | |
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| Input example | scarna_lm [options] input_sequence(multi FASTA format) |
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| Keyword | local multiple aligner | a discriminative pairwise alignment model |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | None |
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| External resources (databases) in building the product. | None |
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| Data type | RNA alignment |
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| Biological species in the main concern | All species |
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| Conditions of use | - |
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| Frequency of updates (in last two years) | 1 time / year |
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| Last date of updates (date of confirmation) | 2008/06/23 (2019/06/03) |
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| Main IDs used in the products | N/A |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | N/A |
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| Published papers (PubMed IDs) | pmid:19376823 |
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| Operational Status | Closed |
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