Name SCARNA Local Multiple
Aliases SCARNA_LM
Description

"SCARNA_LM (SCARNA Local Multiple) is a local multiple aligner for RNA sequences. It is based on a discriminative pairwise alignment model which incorporates secondary structure features as base pairing probability calculrated by Rfold, and uses an efficient local multiple alignment construction procedure proposed by Phuong et al for local multiple alignment of protein sequences (cited from the original site). "

Type Tool
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site -
Interface CUI
Input

Output

Input example

scarna_lm [options] input_sequence(multi FASTA format)

Keyword
local multiple aligner | a discriminative pairwise alignment model
Amount of the all data for download(Mbyte) | Method to obtain the all data. None
External resources (databases) in building the product. None
Data type RNA alignment
Biological species in the main concern
All species
Conditions of use -
Frequency of updates (in last two years) 1 time / year
Last date of updates (date of confirmation) 2008/06/23 (2019/06/03)
Main IDs used in the products N/A
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

N/A

Published papers (PubMed IDs)

pmid:19376823

Operational Status

Closed