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SCARNA Local Multiple

NameSCARNA Local Multiple
DescriptionSCARNA_LM (SCARNA Local Multiple) is a local multiple aligner for RNA sequences. It is based on a discriminative pairwise alignment model which incorporates secondary structure features as base pairing probability calculrated by Rfold, and uses an efficient local multiple alignment construction procedure proposed by Phuong et al for local multiple alignment of protein sequences (cited from the original site).
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
Input examplescarna_lm [options] input_sequence(multi FASTA format)
Keywordlocal multiple aligner | a discriminative pairwise alignment model
Amount of the all data for download(Mbyte) | Method to obtain the all data.None
External resources (databases) in building the product.None
Data typeRNA alignment
Biological species in the main concernAll species
Conditions of use-
Frequency of updates (in last two years)1 time / year
Last date of updates (date of confirmation)2008/06/23 (2019/06/03)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:19376823
Operational StatusClosed