| Name | ALN |
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| Aliases | None |
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| Description | Aln is a program for aligning a pair of nucleotide or amino acid sequences or alignments. Aln can even align a nucleotide sequence and a single or a group of protein sequences. This can be used to predict eukaryotic gene structures (protein-coding exons) based on sequence homology with known protein sequences. |
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| Type | Tool |
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| Main Institutes of management | Graduate School of Informatics, Kyoto University |
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| Country of the Institute | Japan |
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| URL of the site | http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/aln/ |
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| Interface | CUI (Character User Interface), Web |
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| Input | Nucleic acid or Amino acid sequence(FASTA, GenBank, EMBL, SwissProt, PIR, ProDB format) |
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| Output | Alignment(Text) |
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| Input example | After clicking "Online Server", select one of the "Sequence Type". For each sequence 1 and 2, upload or paste your sequence(s), and input sequence type (G, D, or P). Optionally, you check "Complement" when you analyze the complementary strand of your sequence(s), and enter start and end position in your sequence to be aligned. In the step 2, change the parameters if you need. Finally you enter the "Submit" button. |
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| Keyword | align | gene prediction |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0.96|Available at the top page |
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| External resources (databases) in building the product. | None |
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| Data type | DNA, amino acid sequences |
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| Biological species in the main concern | All species |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | 0 |
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| Last date of updates (date of confirmation) | 2010/02/06 (2019/07/09) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | None |
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| Published papers (PubMed IDs) | pmid:7166760 | pmid:2165832 | pmid:8324637 | pmid:7804871 | pmid:12572608 | pmid:10869012 | pmid:18344523 | pmid:18728043 |
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| Operational Status | Available |
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