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Tool

SPALN

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NameSPALN
Aliasesspace-efficient spliced alignment
DescriptionSpaln is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job.
TypeTool
Main Institutes of management"Graduate School of Informatics, Kyoto University"
Country of the InstituteJapan
URL of the sitehttp://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/index.html
InterfaceGUI|Standalone Software
InputNucleic acid or Amino acid sequence(FASTA format)
Output
Input exampleInput a cDNA or protein and a genome sequence to "Sequence 1" and "Sequence 2" text box respectively.
KeywordMapping | Alignment | Transcript | Genomic Sequence
Amount of the all data for download(Mbyte) | Method to obtain the all data.-|none
External resources (databases) in building the product.none
Data typeComparative genomics
Biological species in the main concernAll species
Conditions of useGPL V2
Frequency of updates (in last two years)12
Last date of updates (date of confirmation)2019/05/02 (2019/06/03)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:22848105 | pmid:18344523 | pmid:18728043
Operational StatusAvailable