Name SPALN
Aliases space-efficient spliced alignment
Description

Spaln is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job.

Type Tool
Main Institutes of management "Graduate School of Informatics, Kyoto University"
Country of the Institute Japan
URL of the site http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/index.html
Interface GUI|Standalone Software
Input

Nucleic acid or Amino acid sequence(FASTA format)

Output

Input example

Input a cDNA or protein and a genome sequence to "Sequence 1" and "Sequence 2" text box respectively.

Keyword
Mapping | Alignment | Transcript | Genomic Sequence
Amount of the all data for download(Mbyte) | Method to obtain the all data. -|none
External resources (databases) in building the product. none
Data type Comparative genomics
Biological species in the main concern
All species
Conditions of use GPL V2
Frequency of updates (in last two years) 12
Last date of updates (date of confirmation) 2019/05/02 (2019/06/03)
Main IDs used in the products -
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

-

Published papers (PubMed IDs)

pmid:22848105 | pmid:18344523 | pmid:18728043

Operational Status

Available