Name | SPALN |
Aliases | space-efficient spliced alignment |
Description | Spaln is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. |
Type | Tool |
Main Institutes of management | Graduate School of Informatics, Kyoto University |
Country of the Institute | Japan |
URL of the site | http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/index.html |
Interface | GUI|Standalone Software |
Input | Nucleic acid or Amino acid sequence(FASTA format) |
Output | |
Input example | Input a cDNA or protein and a genome sequence to "Sequence 1" and "Sequence 2" text box respectively. |
Keyword | Mapping | Alignment | Transcript | Genomic Sequence |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | -|none |
External resources (databases) in building the product. | none |
Data type | Comparative genomics |
Biological species in the main concern | All species |
Conditions of use | GPL V2 |
Frequency of updates (in last two years) | 12 |
Last date of updates (date of confirmation) | 2019/05/02 (2019/06/03) |
Main IDs used in the products | - |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | - |
Published papers (PubMed IDs) | pmid:22848105 | pmid:18344523 | pmid:18728043 |
Operational Status | Available |