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RactIP
| Name | RactIP |
|---|---|
| Aliases | None |
| Description | RactIP can provide fast and accurate prediction of RNA-RNA interaction using integer programming. 4 tool archives (Source(version0.0.1 and 0.0.2), Windows, Linux) are ready. |
| Type | Tool |
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://rtips.dna.bio.keio.ac.jp/ractip/ |
| Interface | CUI |
| Input | Nucleic acid sequence(FASTA format) |
| Output | Interaction of nucleic acids(Text) |
| Input example | ractip [options] input_seq1(FASTA format) input_seq2(FASTA format) |
| Keyword | integer programming | RNA interaction | internal and external base-paring probabilities |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | - (C++ source code)|Download from the page https://github.com/satoken/ractip |
| External resources (databases) in building the product. | None |
| Data type | RNA RNA-RNA interaction |
| Biological species in the main concern | All species |
| Conditions of use | GPL |
| Frequency of updates (in last two years) | 2 times / year |
| Last date of updates (date of confirmation) | 2014/03/10 (2019/06/03) |
| Main IDs used in the products | N/A |
| How to make a link to get access to each IDs. | None |
| external databases to which this database/tool have links | N/A |
| Published papers (PubMed IDs) | pmid:20823308 |
| Operational Status | Available |
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