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DescriptionRactIP can provide fast and accurate prediction of RNA-RNA interaction using integer programming. 4 tool archives (Source(version0.0.1 and 0.0.2), Windows, Linux) are ready.
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://rtips.dna.bio.keio.ac.jp/ractip/
InputNucleic acid sequence(FASTA format)
OutputInteraction of nucleic acids(Text)
Input exampleractip [options] input_seq1(FASTA format) input_seq2(FASTA format)
Keywordinteger programming | RNA interaction | internal and external base-paring probabilities
Amount of the all data for download(Mbyte) | Method to obtain the all data.- (C++ source code)|Download from the page https://github.com/satoken/ractip
External resources (databases) in building the product.None
Data typeRNA RNA-RNA interaction
Biological species in the main concernAll species
Conditions of useGPL
Frequency of updates (in last two years)2 times / year
Last date of updates (date of confirmation)2014/03/10 (2019/06/03)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)pmid:20823308
Operational StatusAvailable