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Tool

IPknot

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NameIPknot
AliasesNone
DescriptionRNA pseudoknot prediction based on maximizing expected accuracy (cited from the original site).
TypeTool
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://rtips.dna.bio.keio.ac.jp/ipknot/
InterfaceCUI
InputNucleic acid sequence(FASTA format)
OutputSecondary structure of RNA(Text)
Input exampleipknot input_seq (FASTA format)
Keywordpseudoknot
Amount of the all data for download(Mbyte) | Method to obtain the all data.- (C++ source code)|Download from the page https://github.com/satoken/ipknot
External resources (databases) in building the product.None
Data typeRNA pseudoknot
Biological species in the main concernAll species
Conditions of useGPL
Frequency of updates (in last two years)1 time / year
Last date of updates (date of confirmation)2014/03/10 (2019/07/09)
Main IDs used in the productsN/A
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksN/A
Published papers (PubMed IDs)None
Operational StatusAvailable