Name | IPknot |
Aliases | None |
Description | RNA pseudoknot prediction based on maximizing expected accuracy (cited from the original site). |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | http://rtips.dna.bio.keio.ac.jp/ipknot/ |
Interface | CUI |
Input | Nucleic acid sequence(FASTA format) |
Output | Secondary structure of RNA(Text) |
Input example | ipknot input_seq (FASTA format) |
Keyword | pseudoknot |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | - (C++ source code)|Download from the page https://github.com/satoken/ipknot |
External resources (databases) in building the product. | None |
Data type | RNA pseudoknot |
Biological species in the main concern | All species |
Conditions of use | GPL |
Frequency of updates (in last two years) | 1 time / year |
Last date of updates (date of confirmation) | 2014/03/10 (2019/07/09) |
Main IDs used in the products | N/A |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | N/A |
Published papers (PubMed IDs) | None |
Operational Status | Available |