Name | SGCAL |
Aliases | Structural Glycomics Calculation |
Description | We have developed a web-based tool named SGCAL (Structural Glycomics CALculations). SGCAL is capable of building a 3D structure from oligosaccharide sequence information and of visualizing the calculated results and the experimental MS data, thereby supporting investigations on correlations between the structure of oligosaccharides and their fragmentation patterns. |
Type | Tool |
Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
Country of the Institute | Japan |
URL of the site | - |
Interface | GUI |
Input | Amino acid sequence(FASTA format) |
Output | Cleavage sites(Text) |
Input example | Input the keyword "Fuc" in the text on Searching and Finding Saccharides, then push "Search". |
Keyword | Sugar chain |
Amount of the all data for download(Mbyte) | Method to obtain the all data. | 0.0|None |
External resources (databases) in building the product. | None |
Data type | Sugar chain |
Biological species in the main concern | All species |
Conditions of use | Attribution&Noncommercial&No Derivative WorksUser account is not required. |
Frequency of updates (in last two years) | 0 |
Last date of updates (date of confirmation) | 2006/00/00 (2019/07/08) |
Main IDs used in the products | carbohydrate ID |
How to make a link to get access to each IDs. | None |
external databases to which this database/tool have links | None |
Published papers (PubMed IDs) | pmid:16442513 |
Operational Status | Closed |