| Name | GeneDecoder |
|---|
| Aliases | None |
|---|
| Description | GeneDecoder is a gene finding technology for eukaryotes, based on hidden Markov models (HMMs). The algorithm, using dynamic programing method and statistic models trained by annotated genome sequences, divides the input nucleic acid sequence into some meaningful segments. |
|---|
| Type | Tool |
|---|
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
|---|
| Country of the Institute | Japan |
|---|
| URL of the site | - |
|---|
| Interface | GUI |
|---|
| Input | |
|---|
| Output | |
|---|
| Input example | You can submit nucleic acid sequence data and obtain putative genes which GeneDecoder has found.The gene-finding result data is represented in General Feature Format(GFF). |
|---|
| Keyword | cDNA | eukaryotes | genome | gene prediction |
|---|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | -|None |
|---|
| External resources (databases) in building the product. | None |
|---|
| Data type | DNA-sequence , Eukaryote gene |
|---|
| Biological species in the main concern | Eukaryote |
|---|
| Conditions of use | User account is required. |
|---|
| Frequency of updates (in last two years) | 0 |
|---|
| Last date of updates (date of confirmation) | 0000/00/00 (2019/06/03) |
|---|
| Main IDs used in the products | - |
|---|
| How to make a link to get access to each IDs. | None |
|---|
| external databases to which this database/tool have links | - |
|---|
| Published papers (PubMed IDs) | pmid:9697185 |
|---|
| Operational Status | Closed |
|---|
