Name GeneDecoder
Aliases None
Description

"GeneDecoder is a gene finding technology for eukaryotes, based on hidden Markov models (HMMs). The algorithm, using dynamic programing method and statistic models trained by annotated genome sequences, divides the input nucleic acid sequence into some meaningful segments."

Type Tool
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site -
Interface GUI
Input

Output

Input example

You can submit nucleic acid sequence data and obtain putative genes which GeneDecoder has found.The gene-finding result data is represented in General Feature Format(GFF).

Keyword
cDNA | eukaryotes | genome | gene prediction
Amount of the all data for download(Mbyte) | Method to obtain the all data. -|None
External resources (databases) in building the product. None
Data type "DNA-sequence , Eukaryote gene"
Biological species in the main concern
Eukaryote
Conditions of use User account is required.
Frequency of updates (in last two years) 0
Last date of updates (date of confirmation) 0000/00/00 (2019/06/03)
Main IDs used in the products -
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

-

Published papers (PubMed IDs)

pmid:9697185

Operational Status

Closed