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DescriptionGeneDecoder is a gene finding technology for eukaryotes, based on hidden Markov models (HMMs). The algorithm, using dynamic programing method and statistic models trained by annotated genome sequences, divides the input nucleic acid sequence into some meaningful segments.
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
Input exampleYou can submit nucleic acid sequence data and obtain putative genes which GeneDecoder has found.The gene-finding result data is represented in General Feature Format(GFF).
KeywordcDNA | eukaryotes | genome | gene prediction
Amount of the all data for download(Mbyte) | Method to obtain the all data.-|None
External resources (databases) in building the product.None
Data typeDNA-sequence , Eukaryote gene
Biological species in the main concernEukaryote
Conditions of useUser account is required.
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)0000/00/00 (2019/06/03)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:9697185
Operational StatusClosed