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Tool

Scarna

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NameScarna
AliasesNone
Description"Stem Candidate Aligner for RNA (Scarna) is a fast, convenient tool for structural alignment of a pair of RNA sequences. It aligns two RNA sequences and calculates the similarities of them, based on the estimated common secondary structures. It works even for pseudoknotted secondary structures."
TypeTool
Main Institutes of management"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the InstituteJapan
URL of the site-
InterfaceGUI
Input
Output
Input example"RNA structure prediction, database search and drawing tool are available by clicking the links or Web Services tab in top page."
Keywordcommon secondary structures | RNA | alignment
Amount of the all data for download(Mbyte) | Method to obtain the all data.-|None
External resources (databases) in building the product.None
Data typeRNA
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)0
Last date of updates (date of confirmation)0000/00/00 (2019/07/05)
Main IDs used in the products-
How to make a link to get access to each IDs.-
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:16690634
Operational StatusClosed