AliasesRepresentative protein chains from PDB
DescriptionPDB-REPRDB is a reorganized database of protein chains from PDB (Protein Data Bank), and provides 'the list of the representative protein chains' and 'the list of similar protein chain groups'.Chains classified into coiled coil proteins or peptides, according to SCOP, are removed from the database.
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site -
Input exampleSelect 'Apply constraints'. Set 'threshold'. Set 'priority'. Then, push "Make List" button.
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.PDB (Protein Data Bank) | SCOP (Structural Classification of Proteins)
Data typeProtein-structure protein chain
Biological species in the main concernAll species
Conditions of useUnknown
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2015/06/25 (2019/07/02)
Main IDs used in the productsPDB (Protein Data Bank) ID
How to make a link to get access to each IDs.None
external databases to which this database/tool have linksNone
Published papers (PubMed IDs)pmid:9322039 | pmid:10980149 | pmid:11125096 | pmid:12520060
Operational StatusClosed