Name PDB-REPRDB
Aliases Representative protein chains from PDB
Description

"PDB-REPRDB is a reorganized database of protein chains from PDB (Protein Data Bank), and provides 'the list of the representative protein chains' and 'the list of similar protein chain groups'.Chains classified into coiled coil proteins or peptides, according to SCOP, are removed from the database."

Type DB
Main Institutes of management "Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)"
Country of the Institute Japan
URL of the site -
Interface GUI
Input example

"Select 'Apply constraints'. Set 'threshold'. Set 'priority'. Then, push "Make List" button."

Keyword
Protein
Amount of the all data for download(Mbyte) | Method to obtain the all data. 0|None
External resources (databases) in building the product. PDB (Protein Data Bank) | SCOP (Structural Classification of Proteins)
Data type Protein-structure protein chain
Biological species in the main concern
All species
Conditions of use Unknown
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2015/06/25 (2019/07/02)
Main IDs used in the products PDB (Protein Data Bank) ID
How to make a link to get access to each IDs. None
external databases to which this database/tool have links

None

Published papers (PubMed IDs)

pmid:9322039 | pmid:10980149 | pmid:11125096 | pmid:12520060

Operational Status

Closed