| Name | miRRim |
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| Aliases | None |
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| Description | miRRim is a method for detecting miRNA foldbacks based on hidden Markov model (HMM). In this method, the evolutionary and secondary structural features of a miRNA region is represented by a sequence of multidimensional vectors. HMMs that generate a sequence of continuous values are used to model the feature vector sequences.(cited from the original site) |
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| Type | Tool |
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| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
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| Country of the Institute | Japan |
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| URL of the site | - |
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| Interface | CUI (Character User Interface, or Command line) |
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| Input | |
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| Output | |
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| Input example | perl ./miRRim.pl example/chr9_94011601_94111600_+.dat |
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| Keyword | HMMs | miRNA |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | None |
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| External resources (databases) in building the product. | None |
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| Data type | RNA (miRNA) |
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| Biological species in the main concern | All species |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | 2 |
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| Last date of updates (date of confirmation) | 2010/04/23 (2019/07/08) |
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| Main IDs used in the products | - |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | - |
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| Published papers (PubMed IDs) | pmid:17959929 |
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| Operational Status | Closed |
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