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DescriptionmiRRim is a method for detecting miRNA foldbacks based on hidden Markov model (HMM). In this method, the evolutionary and secondary structural features of a miRNA region is represented by a sequence of multidimensional vectors. HMMs that generate a sequence of continuous values are used to model the feature vector sequences.(cited from the original site)
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the site-
InterfaceCUI (Character User Interface, or Command line)
Input exampleperl ./miRRim.pl example/chr9_94011601_94111600_+.dat
KeywordHMMs | miRNA
Amount of the all data for download(Mbyte) | Method to obtain the all data.None
External resources (databases) in building the product.None
Data typeRNA  (miRNA)
Biological species in the main concernAll species
Conditions of useNone
Frequency of updates (in last two years)2
Last date of updates (date of confirmation)2010/04/23 (2019/07/08)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:17959929
Operational StatusClosed