Name GlycoProtDB
Aliases GPDB
Description

"GlycoProtDB -a glycoprotein database- is a searchable database to provide information of N-glycoproteins which are identified experimentally from C. elegans N2 and mouse tissues (strain C52BL/6J, male). These data were obtained and supplied by the Lab of Biochemistry at Tokyo Metropolitan University (TMU) in Tokyo Japan, and the Research Center for Medical Glycoscience (RCMG) at the AIST in Tsukuba Japan. The studies of C.elegans and mouse tissues were supported in part by grants for the Integrated Proteomics System Project, Pioneer Research on Genome the Frontier, from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan, and for the Structural Glycomics Project from the New Energy and Industrial Technology Development Organization (NEDO) of Japan, respectively."

Type DB
Main Institutes of management "Research Center for Medical Glycoscience (RCMG), National Institute of Advanced Industrial Science and Technology "
Country of the Institute Japan
URL of the site http://jcggdb.jp/rcmg/gpdb/index.action
Interface GUI
Input example

"Input the keyword in the text box on left side of top page, then push search button."

Keyword
glycoprotein | glycosylation site
Amount of the all data for download(Mbyte) | Method to obtain the all data. -|None
External resources (databases) in building the product. None
Data type Protein-motif
Biological species in the main concern
"Caenorhabditis elegans [Taxonomy_id: 6239, nematodes] | Mus musculus [Taxonomy_id: 10090, house mouse]"
Conditions of use None
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2008/00/00 (2009/02/03)
Main IDs used in the products Protein ID
How to make a link to get access to each IDs. Under investigation
external databases to which this database/tool have links

LfDB (http://riodb.ibase.aist.go.jp/rcmg/glycodb/LectinSearch)

Published papers (PubMed IDs)

pmid:17761667 | pmid:17406563 | pmid:16212438 | pmid:17761667