| Name | KaPPA-View |
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| Aliases | The Kazusa Plant Pathway Viewer |
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| Description | The web-based tool KaPPA-View was developed for representing quantitative data for individual transcripts and/or metabolites on plant metabolic pathway maps. The presentation of data in this manner facilitates a good grasp of the transcripts and metabolites, leading to hypotheses of gene function in the metabolic pathway being examined. (cited from CiNii http://ci.nii.ac.jp/naid/110004822705/)New Features of KaPPA-View4:1. A comprehensive review of the system was conducted, and the processing speed was improved dramatically compared to the previous versions.2. As well as Windows, Mac OS X is now fully supported and you can use all the features on it.3. The users can use their own metabolic pathway maps for the analyses.4. As a function for the system developers, KaPPA-View4 offers features to display data directly from external systems such as databases and applications.(cited from original site http://kpv.kazusa.or.jp/kpv4/information/overview_en.html ) |
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| Type | Tool |
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| Main Institutes of management | Kazusa DNA Research Institute (KDRI) |
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| Country of the Institute | Japan |
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| URL of the site | - |
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| Interface | GUI |
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| Input | |
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| Output | |
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| Input example | [Create Account]At first, push "Guest Login" button of the top page and next, click the menu "Create Account".Please input ”Login Name & Email" and then you got a e-mail with your password.[Use KaPPA-View]At first, input your Loginame and Password at the top page ( http://kpv.kazusa.or.jp/kpv4/ ) and nest, click "Temporary Upload" menu on the upper side of the page.Specify your experiment file path in the text box and click "Upload" button. |
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| Keyword | Gene expression | transcriptom | metabolom | omics | plant | pathway |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 2 (KaPPA-View tool)|http://kpv.kazusa.or.jp/kpv4/information/tools_en.html |
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| External resources (databases) in building the product. | None |
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| Data type | Metabolite repression Gene expression |
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| Biological species in the main concern | Arabidopsis,Rice ,Tomato ,Lotus japonicus |
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| Conditions of use | User account is required ( User account is not required for download version.) |
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| Frequency of updates (in last two years) | 2 |
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| Last date of updates (date of confirmation) | 2012/00/00 (2019/07/08) |
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| Main IDs used in the products | None |
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| How to make a link to get access to each IDs. | None |
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| external databases to which this database/tool have links | KEGG (http://www.genome.jp/kegg/) |
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| Published papers (PubMed IDs) | pmid:16010003 | Sakurai N and Shibata D (2006) KaPPA-View for integrating quantitative transcriptomic and metabolomic data on plant metabolic pathway maps. J Pesticide Science, 31, 293-295 | Tokimatsu T, Sakurai N, Suzuki H and Shibata D (2006) KaPPA-View: A tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps. In Saito K, Dixon RA and Willmitzer L eds, Biotechnology in Agriculture and Forestry, Vol. 57, pp. 155-163, Springer-Verlag, Berlin Heidelberg | Ogata Y, Sakurai N, Provart NJ, Steinhauser D and Krall L (2008) Bioinformatics Tools to Discover Co-Expressed Genes in Plants. In Kahl G and Meksem K eds, The Handbook of Plant Functional Genomics: Concepts and Protocols, pp. 309-335, WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim |
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| Operational Status | Closed |
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