AliasesThe integrated database for co-expressed genes and biological processes in plants.
DescriptionCoP is an integrated database for co-expressed genes and biological processes in plants. The information of biological processes is based on the biological process aspect of Gene Ontology. The genomic data in this database, including such information, were obtained from the TAIR database. The co-expression analyses in this database were executed using the Confeito algorithm, an approach for co-expression network analysis. The renewal version has been released at March 12, 2009, upgraded from the CoexProcess database. It includes co-expression analyses in 5257, 3654, and 1388 assays ofArabidopsis DNA microarray datasets and 95 assays of Populus DNA microarray datasets. This database will be reinforced every month. (cited from original site)
Main Institutes of managementKazusa DNA Research Institute (KDRI)
Country of the InstituteJapan
URL of the site
Input exampleInput the gene id "At5g61420" in the text box ("Input query word") , the push "Submit" button.
Keywordco-expressed genes | biological processes | microarray | Confeito
Amount of the all data for download(Mbyte) | Method to obtain the all data.0|None
External resources (databases) in building the product.TAIR | GO
Data typeGene expression
Biological species in the main concernArabidopsis thaliana | Glycine max | Hordeum vulgare | Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] | Glycine max [Taxonomy_id: 3847, soybean] | Hordeum vulgare [Taxonomy_id: 4513, barley] | Oryza sativa [Taxonomy_id: 4530, rice] | Populus trichocarpa [Taxonomy_id: 3694] | Triticum aestivum [Taxonomy_id: 4565, bread wheat] | Vitis vinifera [Taxonomy_id: 29760, wine grape] | Zea mays [Taxonomy_id: 4577, maize]
Conditions of useNone
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2010/01/17 (2019/07/03)
Main IDs used in the productsAGI Code | Probe ID | Organism | GO ID
How to make a link to get access to each IDs.
external databases to which this database/tool have linksNCBI | TAIR | KEGG | BAR | ATTED
Published papers (PubMed IDs)None
Operational Statusavailable