| Name | CoP |
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| Aliases | The integrated database for co-expressed genes and biological processes in plants. |
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| Description | CoP is an integrated database for co-expressed genes and biological processes in plants. The information of biological processes is based on the biological process aspect of Gene Ontology. The genomic data in this database, including such information, were obtained from the TAIR database. The co-expression analyses in this database were executed using the Confeito algorithm, an approach for co-expression network analysis. The renewal version has been released at March 12, 2009, upgraded from the CoexProcess database. It includes co-expression analyses in 5257, 3654, and 1388 assays ofArabidopsis DNA microarray datasets and 95 assays of Populus DNA microarray datasets. This database will be reinforced every month. (cited from original site) |
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| Type | DB |
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| Main Institutes of management | Kazusa DNA Research Institute (KDRI) |
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| Country of the Institute | Japan |
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| URL of the site | http://webs2.kazusa.or.jp/kagiana/cop/ |
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| Interface | GUI |
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| Input example | Input the gene id "At5g61420" in the text box ("Input query word") , the push "Submit" button. |
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| Keyword | co-expressed genes | biological processes | microarray | Confeito |
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| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0|None |
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| External resources (databases) in building the product. | TAIR | GO |
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| Data type | Gene expression |
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| Biological species in the main concern | Arabidopsis thaliana | Glycine max | Hordeum vulgare | Arabidopsis thaliana [Taxonomy_id: 3702, thale cress] | Glycine max [Taxonomy_id: 3847, soybean] | Hordeum vulgare [Taxonomy_id: 4513, barley] | Oryza sativa [Taxonomy_id: 4530, rice] | Populus trichocarpa [Taxonomy_id: 3694] | Triticum aestivum [Taxonomy_id: 4565, bread wheat] | Vitis vinifera [Taxonomy_id: 29760, wine grape] | Zea mays [Taxonomy_id: 4577, maize] |
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| Conditions of use | None |
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| Frequency of updates (in last two years) | 1 |
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| Last date of updates (date of confirmation) | 2010/01/17 (2019/07/03) |
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| Main IDs used in the products | AGI Code | Probe ID | Organism | GO ID |
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| How to make a link to get access to each IDs. | http://webs2.kazusa.or.jp/kagiana/cgi-bin/athpmk.cgi?proc=GO:0010439 |
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| external databases to which this database/tool have links | NCBI | TAIR | KEGG | BAR | ATTED |
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| Published papers (PubMed IDs) | None |
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| Operational Status | available |
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