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CentroidFold
| Name | CentroidFold |
|---|---|
| Aliases | None |
| Description | CentroidFold is a software to predict RNA second structure and common second structure. A benchmark test shows it performs better than Mfold and RNAfold. |
| Type | Tool |
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://rtools.cbrc.jp/ |
| Interface | GUI |
| Input | Nucleic acid sequence(FASTA format) |
| Output | Secondary structure of RNA(Text, PNG, PDF, EPS format) |
| Input example | If you input RNA sequence, then the secondary structure prediction is displayed. If you input multiple RNA sequences, then the common secondary structure prediction is displayed. |
| Keyword | RNA | common second structure | predict |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | None |
| External resources (databases) in building the product. | None |
| Data type | RNA |
| Biological species in the main concern | All species |
| Conditions of use | Attribution&Share Alike |
| Frequency of updates (in last two years) | 1 |
| Last date of updates (date of confirmation) | 2018/07/05（2019/06/03） |
| Main IDs used in the products | - |
| How to make a link to get access to each IDs. | None |
| external databases to which this database/tool have links | - |
| Published papers (PubMed IDs) | pmid:19095700 | pmid:19435882 |
| Operational Status | Available |
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