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DescriptionCentroidFold is a software to predict RNA second structure and common second structure. A benchmark test shows it performs better than Mfold and RNAfold.
Main Institutes of managementComputational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the InstituteJapan
URL of the sitehttp://rtools.cbrc.jp/
InputNucleic acid sequence(FASTA format)
OutputSecondary structure of RNA(Text, PNG, PDF, EPS format)
Input exampleIf you input RNA sequence, then the secondary structure prediction is displayed. If you input multiple RNA sequences, then the common secondary structure prediction is displayed.
KeywordRNA | common second structure | predict
Amount of the all data for download(Mbyte) | Method to obtain the all data.None
External resources (databases) in building the product.None
Data typeRNA
Biological species in the main concernAll species
Conditions of useAttribution&Share Alike
Frequency of updates (in last two years)1
Last date of updates (date of confirmation)2018/07/05(2019/06/03)
Main IDs used in the products-
How to make a link to get access to each IDs.None
external databases to which this database/tool have links-
Published papers (PubMed IDs)pmid:19095700 | pmid:19435882
Operational StatusAvailable