FLJ Human cDNA Database
| Summary | FLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing.Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site) |
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| Data type | DNA-sequence full length cDNA |
FuLoJa
| Summary | FuLoJa include the lotus japonicus full-length cDNA sequences analysed with InterPro(cited from original site). |
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| Data type | DNA-motif |
G-compass
| Summary | G-compass was designed as a tool for the study of comparative genomics. It provides the data of evolutionarily conserved genomic regions and orthologous genes between human and 12 vertebrates (chimpanzee, rhesus monkey, mouse, rat, dog, cow, horse, opossum, chicken, zebrafish, medaka and Tetraodon). Information of ultraconserved elements (UCE) and copy number variable regions (CNV) are provided. Sliding window analysis and dot plot analysis are also implemented. |
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| Data type | Comparative genomics |
GenoBase
| Summary | Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained. |
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| Data type | Annotation |
GGDB
| Summary | Glycogene includes genes associated with glycan synthesis such as glycosyltransferase, sugar nucleotide synthases, sugar-nucleotide transporters, sulfotransferases, etc. In "Construction of GlycoGene Library Project " (April, 2001 - March, 2004), we collected and compiled the data on such glycogenes as GlycoGene Database (GGDB), which is the first database to store information on substrate specificity. |
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| Data type | DNA-sequence Substrates, Expression |
H-InvDB
| Summary | H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, protein functions, etc. |
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| Data type | RNA human full-length cDNA, mRNA |
HGPD
| Summary | HGPD is a unique database that stores the information of a set of human Gateway entry clones and protein expression data and helps the user to search the Gateway entry clones. In the full-length human cDNA sequencing project (FLJ project at NEDO), nucleotide sequences of approximately 30000 human cDNA clones have been analyzed.(cited from paper http://nar.oxfordjournals.org/cgi/content/abstract/gkn872?ijkey=zKpNqhZH6jrUuzi&keytype=ref) |
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| Data type | DNA-sequence |
Human-Gene diversity Of Life-style related Diseases (H-GOLD)
| Summary | Genetic polymorphism information relating to model diseases. This site provides two databases and seven (downloadable) analysis tools. At 22th Jun 2012, The archive of GDBS data set opened in LSDB Archive. |
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| Data type | , microsatellites, SNP |
Integrated Cancer Genome Database
| Summary | In order to identify genes responsible for drug sensitivities and side effects of anti-cancer drugs, the project genotyped about 3,000 SNPs in candidate genes for breast cancer patients by the Invader method. The database stores genotype frequencies of these SNPs and their relation with drug sensitivities and side effects. The candidate genes include 512 genes related to pharmacokinetics, DNA repair, apotosis, cell cycle control, angiogenesis, and inflammation. The database provides genotype frequencies of these SNPs and it is downloadable. |
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| Data type | - |
JSNP DATABASE
| Summary | The standard allele frequency of 786 Japanese SNPs has been registered since Release 9. NEDO project detaset is includes in JSNP. |
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| Data type | single nucleotide polymorphism (SNP) allele frequency |