LEGENDA
| Summary | Legenda is the system to find articles in which any pair of gene names, diseases, and substrates are co-occurred in the abstract in MEDLINE. Co-occurrence of the same types (e.g. genes) can be searched. Legenda has its own gene name dictionary. |
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| Data type | Journal , Gene, Disease, Substrate |
MCG CNV Database
| Summary | The MCG CNV Database provides copy number variant ( CNV ) and loss of heterozygosity ( LOH ) detected through microarray analyses in healthy Japanese by our in-house BAC-based arrays, so-called MCG arrays1), and SNP array ( illumina, HumanOmniExpress Beadchip ). The MCG CNV Database shows an incidence of CNV and LOH in the Japanese healthy population and can be of assistance to estimate a pathogenicity of CNV or LOH detected in subjects having possible involvement of cryptic genomic aberrations behind their pathogenesis.(cited from original site) |
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| Data type | DNA-polymol array |
Microorganism database system
| Summary | This database allows users to search microorganisms and to see the various biological information. This database is available only in Japanese. |
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| Data type | Journal old species name (if any), philogenetic position, type strain, isolation origin, chemical components as chemical taxonomic index, substrate availability, energy gain type, accession number of 16S rDNA to DDBJ/EMBL/GenBank and so on. |
MiFuP
| Summary | MiFuP is a database of functional potentials deduced from microbial genomes. You can easily search for microbes with potential functions of your interest.In the function search, you can search for functional potentials from your microbial genome sequences or cds sequences. Associated MiFuP wiki is an information web site about microbial functions (e.g., detailed description of each function, underlying mechanisms, representative microbes, industrial use). MiFuP wiki is in Japanese only. |
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| Data type | DNA-Sequence| Amino acid sequence| Annotation |
MiFuP Safety
| Summary | It is a database that searches for genes related to harmfulness from the genome information of microorganisms and estimates harmfulness of microorganisms. When a nucleotide sequence of a microbial genome or amino acid sequence is inputted, You can estimate that the target microorganism has a harmful function, detecting a gene region concerning toxicity (toxin production, drug resistance etc.) in the sequence. |
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| Data type | DNA-sequence| Amino acid sequence| Annotation |
NBRC culture catalogue search
| Summary | Microorganisms (15,400 clones) held by NBRC of NITE can be searched. There are four ways to search, the first is NBRC number, the second is keyword, the third is scientific name or numberof other institutions, and last is homology search. The results can provide the scientific name, history, agency numbers, culture conditions and the paper information. In addition, prokaryotic (16SrDNA) and eukaryotic (28rDNA) for the registration of the sequence to confirm the identity resources search from the search sequence information. (Own translation) |
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| Data type | DNA-sequence |
PMPj-Blast
| Summary | The database of nucleotide sequences of ESTs, cDNAs and oligo DNA microarray probes for Lotus japonicus et al. which were obtained from the PMPj(cited from original site). |
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| Data type | DNA-sequence , EST-sequence |
RAvariome
| Summary | RAvariome is a human genetic variant database of autoimmune inflammatory disease Rheumatoid Arthritis (RA). RAvariome provides literature-curated data and "HOT variants", the significant and reproducible variants in different studies. Moreover, based on the confirmed associations, we developed genetic risk prediction tool that provides relative risk for RA to be usable for clinicians, researchers and the general public. |
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| Data type | Genetic/Genomic variants |
SAHG
| Summary | SAHG is a comprehensive database, which exhibits protein structures encoded in the human genome. All of the Open Reading Frames encodeing proteins in the human genome are subjected to protein structure prediction. The development of this database is supported by JST(Japan Science and Technology Agency). (cited from original site) |
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| Data type | Protein-structure |
SEVENS
| Summary | SEVENS database includes G-protein coupled receptors (GPCR) genes with seven transmembrane helices, that are identified with high accuracy from complete genomes of 32 eukaryotes, by a pipeline integrating such software as a gene finder, a sequence alignment tool, a motif and domain assignment tool, and a TMH predictor. |
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| Data type | Ptotein-sequence amino acid sequence |