H-DBAS
| Summary | H-DBAS is a database of humanalternative splicing (AS) based on H-InvDB. H-DBAS offers variousannotated informarion of genome-wide human AS variants. The fullness ofAS variants were ensured and the representative AS variants (RASVs) were then selected. H-DBAS includes an interactive viewer constructed byFlash. In the viewer, RASVs affecting protein functions, theconservation of RASVs between human and mouse, rat, chimpanzee, macaqueand dog by comparative genomics and so on can be displayed. |
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| Data type | Human and mouse full-length cDNA | Human and mouse mRNA | Rat, chimpanzee, macaque and dog RNA |
H-EPD
| Summary | H-Inv Extended Protein Database (H-EPD) provides comprehensive, non-redundant human protein sequences, including both curated and predicted human proteins. It was made by merging H-Inv proteins (predicted from transcriptome) with UniProtKB/Swiss-Prot and RefSeq proteins (curated). H-EPD was designed as a reference database for human proteome research. |
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| Data type | Ptotein-sequence |
H-Exp
| Summary | This is a DB of Human Tissue-specific expression profile data and it was integrated and coordinated with H-InvDB. This system enables (1) fast search, sort, and view for gene cluster or isoform, (2) comparison of expression pattern for gene cluster or isoform, (3) display of detailed information for gene expression and related data.* Original site is now closed. |
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| Data type | Gene expression |
H-InvDB
| Summary | H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, protein functions, etc. |
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| Data type | RNA human full-length cDNA, mRNA |
HGPD
| Summary | HGPD is a unique database that stores the information of a set of human Gateway entry clones and protein expression data and helps the user to search the Gateway entry clones. In the full-length human cDNA sequencing project (FLJ project at NEDO), nucleotide sequences of approximately 30000 human cDNA clones have been analyzed.(cited from paper http://nar.oxfordjournals.org/cgi/content/abstract/gkn872?ijkey=zKpNqhZH6jrUuzi&keytype=ref) |
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| Data type | DNA-sequence |
JSNP DATABASE
| Summary | The standard allele frequency of 786 Japanese SNPs has been registered since Release 9. NEDO project detaset is includes in JSNP. |
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| Data type | single nucleotide polymorphism (SNP) allele frequency |
Microorganism database system
| Summary | This database allows users to search microorganisms and to see the various biological information. This database is available only in Japanese. |
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| Data type | Journal old species name (if any), philogenetic position, type strain, isolation origin, chemical components as chemical taxonomic index, substrate availability, energy gain type, accession number of 16S rDNA to DDBJ/EMBL/GenBank and so on. |
MiFuP
| Summary | MiFuP is a database of functional potentials deduced from microbial genomes. You can easily search for microbes with potential functions of your interest.In the function search, you can search for functional potentials from your microbial genome sequences or cds sequences. Associated MiFuP wiki is an information web site about microbial functions (e.g., detailed description of each function, underlying mechanisms, representative microbes, industrial use). MiFuP wiki is in Japanese only. |
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| Data type | DNA-Sequence| Amino acid sequence| Annotation |
NBRC culture catalogue search
| Summary | Microorganisms (15,400 clones) held by NBRC of NITE can be searched. There are four ways to search, the first is NBRC number, the second is keyword, the third is scientific name or numberof other institutions, and last is homology search. The results can provide the scientific name, history, agency numbers, culture conditions and the paper information. In addition, prokaryotic (16SrDNA) and eukaryotic (28rDNA) for the registration of the sequence to confirm the identity resources search from the search sequence information. (Own translation) |
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| Data type | DNA-sequence |
PMPj-Blast
| Summary | The database of nucleotide sequences of ESTs, cDNAs and oligo DNA microarray probes for Lotus japonicus et al. which were obtained from the PMPj(cited from original site). |
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| Data type | DNA-sequence , EST-sequence |