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RAvariome
| Summary | RAvariome is a human genetic variant database of autoimmune inflammatory disease Rheumatoid Arthritis (RA). RAvariome provides literature-curated data and "HOT variants", the significant and reproducible variants in different studies. Moreover, based on the confirmed associations, we developed genetic risk prediction tool that provides relative risk for RA to be usable for clinicians, researchers and the general public. |
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| Data type | Genetic/Genomic variants |
Recount DB
| Summary | RecountDB is a database for corrected read counts and genome mapping on NCBI's Short Read Archive. The corrected count was done using RECOUNT and the mapping with LAST. |
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| Data type | RNA |
RNAapt3D
| Summary | RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structural information, target proteins of RNA aptamers and network of RNA-protein interaction. The tertiary structures are predicted by a given RNA sequence considering a wide variety of secondary structures with a modelling tool, RASCAL, and molecular dynamics simulations. This database can be used to provide insights for tertiary structural analysis, motif search with base flip position and a starting point by RNA-protein complex molecular simulations. This database facilitates a study on the design of RNA aptamer for a target molecule and improves the efficiency and the productivity in candidate selection. |
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| Data type | RNA structure |
SAHG
| Summary | SAHG is a comprehensive database, which exhibits protein structures encoded in the human genome. All of the Open Reading Frames encodeing proteins in the human genome are subjected to protein structure prediction. The development of this database is supported by JST(Japan Science and Technology Agency). (cited from original site) |
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| Data type | Protein-structure |
The Functional RNA Sequence Database
| Summary | fRNAdb is a sequence database hosting a large collection of non-coding RNA sequence data from public non-coding databases.fRNAdb allows users to search the sequences through keywords associated with them. Various kinds of information are associated with a sequence.fRNAdb also provides sequence homology search using Blastn. |
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| Data type | RNA |
TOT-DB
| Summary | TOT-DB (The Theileria orientalis Genome Annotation Database) ia a database of the genome information of parasitic protists Theileria orientalis.Genes annotated by an integration of expression data and gene prediction by several software are displayed on the G-integra genome browser.TOT-DB also offers the BLAST homolgy search service and data downloads of the genome sequences and gene annotation of T. orientalis. |
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| Data type | Comparative genomics |
TuMaRdb
| Summary | TuMaRdb is tumor markers reference database. This database has two ways(marker name and disease name) to search genes and references, and provides 82 markers and 488 case studies. |
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| Data type | Sugar chain marker |
UCSC GenomeBrowser for Functional RNA
| Summary | UCSC GenomeBrowser for Functional RNA is a UCSC Genome Browser mirror with large additional custom tracks specifically associated with non-coding elements. It also includes several functional enhancements such as a presentation of a common secondary structure prediction at any given genomic window <500 bp. |
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| Data type | Comparative genomics |
VarySysDB
| Summary | This is a system to search, display, and download our research results on human polymorphism based on publicly available data and annotations of transcripts presented by H-InvDB. It provides information about single nucleotide polymorphisms (SNPs), deletion-insertion polymorphisms (DIPs), short tandem repeats (STRs), single amino acid repeats (SARs), structural variation (or copy number variations: CNVs), and their relations to the genome, transcripts, and functional domains. |
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| Data type | - |
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